Transcript Information: S_Transcript_56137.p1


Annotated TAIR IDAT5G17920.1
Annotated Gene NameCobalamin-independent synthase family protein
Annotated Gene Symbol(s)ATCIMS, ATMETS, ATMS1
Annotation TypeOrtholog
Chromosome Positionchr5:5935771-5939195 | Forward length=765
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7631113318307
Replicate 21.3237673734509
Replicate 31.5906859872106
Condition 2: 8 Hour
Replicate 10.71973192320324
Replicate 22.4329385395703
Replicate 30.87927871370548
Condition 3: 24 Hour
Replicate 10.5734281916281
Replicate 20.87822269858346
Replicate 31.7655431083581


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_56137.p1 GENE.S_Transcript_56137~~S_Transcript_56137.p1 ORF type:complete len:800 (+),score=182.29,Meth_synt_1|PF08267.8|7.2e-118,Meth_synt_1|PF08267.8|1.2e+02,Meth_synt_1|PF08267.8|0.005,Meth_synt_2|PF01717.14|0.053,Meth_synt_2|PF01717.14|5e-102 S_Transcript_56137:101-2500(+)
ATGATTTCCAGATCTATACTCCAAAAAACACAAAAGCAACTCCTGTTGCCACTTACCAGGAGTTGTTGGGGGACTGGACCTGTGTCTCTCAGTTGTACTCCTATAAATGGAGTAATGAACCAACACTCTCCCTTTCATCCCTCTCTCACTCCTCTCTCTTTTTCTTCTCCTCCTCCTCTTTCCTTTGTCTCTCTTCGTTCTCTCTCTTTCTCTGTCACCAAACCCCGCTTCTCTTTCTCATTTCTTCGCCTCACCGTTCGCGCCAGAACAATGGCATCACACATAGTTGGGTACCCCCGTATGGGACCGAAGAGAGAGTTGAAATTTGCATTGGAATCCTTTTGGGATGGTAAAATCAATGCTGAAGAGTTGCAAAAGGTTGCTTCTACTCTTAGGACTTCCATTTGGAAGGAGATGGCTGATGCTGGGATTAAGTATATTCCTAGCAACACTTTCTCCTACTATGACCAAGTGTTGGATACTACTGCCATGCTTGGTGCTGTTCCCCCGAGATATGGCTGGATTGGTGGTGAGATTGGGTTCGATGTTTACTTCTCCATGGCTCGAGGCAATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTCGACACCAACTACCATTACATTGTCCCTGAATTGGGCCCTGACATGAAGTTTACATATGCCTCTCACAAGGCAGTGGCTGAATACAAGGAGGCCAAGGCTCTTGGAGTTGAAACTGTTCCAGTTGTTGTTGGTCCAGTGTCTTACCTATTGTTATCAAAGCCTTCTAAGGGCATTGAGAAGTCCTTCCCTCTTCTTTCTCTGCTTGACAAAATTCTCCCTGTTTACAAGGAGGTCATATCTGAACTTAAGGCTGCTGGTGCATCATGGATTCAGTTTGACGAGCCTAAACTTGTCATGGACCTTGATGCTCACCAATTGCAAGCTTTTGCACATGCCTACTCGGAGCTAGAGCCTTCTCTATCAGGATTGAACGTTCTCATCGAGACCTACTTTGCTGATGTTCCAGCTGAGGCATATAAAACTCTTACTTCATTGAAAGGTGTAACTGCTTATGGCTTTGACCTTGTTCGTGGAACAAAGACCCTTGATTTGATTAAGGGTGGATTTCCTTCTGGCAAGTATCTCTTTGCTGGAGTAGTGGATGGGAGGAACATCTGGGCTAATGACCTTGCGACTTCCCTTCGTACCTTGCATGGTCTTGAGGGTCTTGTCGGGAAAGACAAGCTTGTTGTATCTACCTCATGCTCTCTTCTTCATACTGCTGTTGATCTGGTGAACGAGACTAAGTTGGATGCGGAGCTCAAGTCATGGCTGGCCTTTGCAGCTCAGAAAATTGTTGAGGTGAATGCCTTGGCTAAGGCATTGTCTGGGCAGAAAGACGAGGCTTTTTTCTCTGCAAATGCTGCAGCACAGGCTTCAAGAAAGTCTTCCCCTAGAGTCACTAATGAAGCAGTTCAAAAGGCTGCTGCTGCCTTGAGGGGATCTGATCATCGCCGCGCCACTGATGTAAGTGCCAGGTTGGTGGCTCAACAGAAGATGCTAAATCTTCCACTCCTACCAACCACCACAATTGGATCCTTTCCTCAAACCATGGACCTCAGAAGAGTCCGTCGTGAATACAAGGCCAACAAGATCTCTGAGGATGAGTATGTGAAGGCTATTAAAGAGGAGATTAGCAAGGTTGTTCAACTCCAAGAGGAACTTGACATTGATGTTTTGGTCCATGGAGAGCCAGAGAGAAATGACATGGTTGAGTACTTTGGCGAGCAACTATCTGGTTTTGCCTTCACTGTTAATGGGTGGGTCCAATCTTATGGGTCTCGATGTGTCAAGCCACCTATCATCTATGGTGATGTAAGTCGACCCAAGGCCATGACAGTCTTCTGGTCCACGATGGCTCAGAGCATGACAAAACGCCCTATGAAGGGAATGCTTACGGGCCCTGTAACCATTTTGAACTGGTCCTTTGTCCGAAATGACCAACCTAGGTTTGAGACGTGCTACCAGATCGCTTTGGCCATAAAGGATGAGGTTGAGGATCTTGAGAAGGCCGGGATCACTGTCATCCAAATTGATGAGGCTGCCTTGAGAGAGGGTTTGCCTTTGAGGAAGTCTGAGCAGCCTTTCTATCTAGATTGGGCTGTTCACTCTTTCAGGATAACAAACGTTGGGGTTCAAGACACAACCCAGGTTCTTACTTGTCTATTTCTAAGGAAATGTTTCTCTTGTTGGTACACTCAACGTATGATCTTAAGGCGTTCCAAAGTCAATAAAGCATATGGTTTTGTAGCTCCTTTGTGCATGTTTGATGTACTGATGACTTTATGTTGTTGGGCAATTTGTTTTGATGCGGTAGATTCACACACACATGTGCTACTCCAATTTCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_56137.p1 GENE.S_Transcript_56137~~S_Transcript_56137.p1 ORF type:complete len:800 (+),score=182.29,Meth_synt_1|PF08267.8|7.2e-118,Meth_synt_1|PF08267.8|1.2e+02,Meth_synt_1|PF08267.8|0.005,Meth_synt_2|PF01717.14|0.053,Meth_synt_2|PF01717.14|5e-102 S_Transcript_56137:101-2500(+)
MISRSILQKTQKQLLLPLTRSCWGTGPVSLSCTPINGVMNQHSPFHPSLTPLSFSSPPPLSFVSLRSLSFSVTKPRFSFSFLRLTVRARTMASHIVGYPRMGPKRELKFALESFWDGKINAEELQKVASTLRTSIWKEMADAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYGWIGGEIGFDVYFSMARGNATVPAMEMTKWFDTNYHYIVPELGPDMKFTYASHKAVAEYKEAKALGVETVPVVVGPVSYLLLSKPSKGIEKSFPLLSLLDKILPVYKEVISELKAAGASWIQFDEPKLVMDLDAHQLQAFAHAYSELEPSLSGLNVLIETYFADVPAEAYKTLTSLKGVTAYGFDLVRGTKTLDLIKGGFPSGKYLFAGVVDGRNIWANDLATSLRTLHGLEGLVGKDKLVVSTSCSLLHTAVDLVNETKLDAELKSWLAFAAQKIVEVNALAKALSGQKDEAFFSANAAAQASRKSSPRVTNEAVQKAAAALRGSDHRRATDVSARLVAQQKMLNLPLLPTTTIGSFPQTMDLRRVRREYKANKISEDEYVKAIKEEISKVVQLQEELDIDVLVHGEPERNDMVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKAMTVFWSTMAQSMTKRPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGITVIQIDEAALREGLPLRKSEQPFYLDWAVHSFRITNVGVQDTTQVLTCLFLRKCFSCWYTQRMILRRSKVNKAYGFVAPLCMFDVLMTLCCWAICFDAVDSHTHVLLQFQ*

Click here to download the sequence:
Link to NCBI Protein BLAST