Transcript Information: S_Transcript_56187.p1


Annotated TAIR IDAT4G05420.1
Annotated Gene Namedamaged DNA binding protein 1A
Annotated Gene Symbol(s)DDB1A
Annotation TypeOrtholog
Chromosome Positionchr4:2746288-2752663 | Forward length=1088
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 129.469626138406
Replicate 232.223817408774
Replicate 329.846776560983
Condition 2: 8 Hour
Replicate 129.1316570479
Replicate 229.637568289693
Replicate 329.627072588575
Condition 3: 24 Hour
Replicate 130.141930981517
Replicate 228.83918041871
Replicate 328.461573044305


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_56187.p1 GENE.S_Transcript_56187~~S_Transcript_56187.p1 ORF type:complete len:1090 (+),score=219.36,MMS1_N|PF10433.5|8.4e-119,MMS1_N|PF10433.5|2e+02,CPSF_A|PF03178.11|1.3e+03,CPSF_A|PF03178.11|4.8e+02,CPSF_A|PF03178.11|2.4e-86 S_Transcript_56187:105-3374(+)
ATGAGTATATGGAACTACGTTGTTACGGCCCATAAGCCTACCAACGTCACTCATTCTTGTGTCGGTAATTTCACCAGCCCTCAAGAGCTCAATCTCATCATCGCGAAATGCACCCGGATTGAGATACATTTGTTAACTCCACAGGGTCTTCAGCCCATGTTGGATGTTCCAATATATGGAAGAATTGCAACTCTAGAACTTTTTCGACCTCATGGTGAAGCACAAGATTTTTTATTCATTGCAACAGAGAGATATAAATTCTGTGTTCTTCAATGGGATCCAGAGACATCAGAGCTTGTCACCAGAGCAATGGGAGATGTTTCTGATCGTATTGGCCGTCCCACTGACAATGGACAGATTGGCATCATTGATCCTGATTGCAGATTGATTGGACTCCACTTATACGATGGATTATTCAAGGTTATCCCATTTGATAATAAAGGACAGCTGAAAGAAGCATTTAATATGAGGCTTGAAGAGCTCCAAGTGCTTGATATAAAGTTTCTCTATGGTTGTTCAAGGCCTACTATCGTAGTTCTTTATCAGGACAACAAGGATGCTCGTCATGTGAAAACATACGAGGTCTCACTGAAGGACAAAGATTTTATTGAGGGGCCATGGTCTCAAAATAATCTTGATAATGGAGCTGACTTGCTTATACCAGTTCCTTCGCCACTCTGTGGTGTTATCATTGTTGGGGAGGAGACCATTGTATACTGCAGTGCAACTGCATTCAAAGCAATTCCTATCAGACCTTCCATAACAAGAGCGTATGGTAGGGTGGATGCTGATGGTTCTCGATATTTGCTTGGTGATCATGCAGGACTCCTGCACCTGCTTGTTATCACCCATGAAAAAGAGAAAGTTACTGGGCTCAAAATTGAGCTCCTTGGAGAAACTTCCATTGCATCAACAATATCATACTTGGATAATGCTTTTGTTTATATCGGTTCGAGCTATGGAGATTCACAGCTCATAAAGTTAAATTTACAGCCAGACACAAAAGGATCATATGTAGAAGTGTTGGAAAGATATGTTAATTTGGGCCCAATTGTAGACTTTTGTGTGGTGGACCTTGAGAGACAAGGTCAAGGCCAAGTTGTTACTTGCTCTGGTGCATACAAGGACGGTTCTCTTCGCATTGTTCGTAATGGCATTGGGATCAATGAACAGGCCTCTGTAGAACTTCAAGGCATCAAGGGAATGTGGTCTTTGAGGTCTTCGACAGATGATGTGTATGACACATTCTTGGTTGTTAGCTTCATCAGTGAGACAAGGATCTTGGCAATGAATCTTGAGGATGAATTGGAAGAGACCGAAATCGAAGGGTTTGATTCTCAAGTGCAGACTTTGTTTTGCCATGATGCTGTGTACAACCAACTCGTGCAAGTCACTTCAAGTTCAGTTAGACTAGTCAGTTCAATATCGAGAGAATTGCGGAATGAGTGGAAAGCCCCATCAGGATTTTCTGTGAATGTTGCTACAACTAATGCCTCCCAGGTTTTGCTGGCCACTGGTGGCGGACATCTTGTTTATCTGGAAATTGGTGATGGAATCCTTACTGAAGTCAAGCATGCACAATTGGACTATGAGATTTCATGTCTTGACATAAACCCTATTGGTGAAAATCCGAATTATAGTCAGCTAGCTGCTGTTGGAATGTGGACTGATATAAGTGTTAGAATATATTCACTTCCAGATCTTAATTTGATCACCAAGGAGAATCTCGGAGGAGAAATTATTCCTCGCTCTGTTCTTTTGTGCTCTTTTGAAGGGATAGCTTATCTATTGTGTGCTCTTGGAGACGGCCATCTCTTGAACTTCATATTGAACATGAGCTCTGGTGAACTGACCGACCGAAAGAAGGTGTCTCTGGGTACACAACCTATTACACTCAGGACATTCTCATCCAAGAACACAATACATGTGTTTGCTGCCTCTGATCGGCCAACAGTTATATACAGCAGCAACAAAAAGCTACTATACAGTAATGTGAATCTCAAGGAAGTTAGCCATATGTGCCCTTTCAATTCAGCTGCTTTTCCCGACAGCCTTGCAATTGCCAAAGAAGGAGAACTTACAATCGGCACTATTGATGATATCCAGAAGCTTCATATCCGCTCCATACCTCTAGGCGAGCATGCACGACGTATATGCCACCAGGAGCAAACTCGTTCTTTTGCCATTTGCAGTCTGAAGTACAACCAAGCTAGTGCTGAGGAATCTGAAATGCATTTTGTGCGGTTGTTGGATGATCAAACCTTTGAGATCATATCAACATATGCACTTGATACTTATGAATGTGGTTGTTCAATACTAAGTTGCTCCTTCTCAGATGACAGCAACGTGTATTACTGTGTTGGGACAGCATATGTTTTGCCTGAGGAAAATGAGCCGACCAAGGGAAGGATTCTGATATTTGTGGTGGAGGATGCAAAACTGCAGCTCATTGCTGAGAAGGAAACTAAAGGTGCTGTATATTCACTCAATGCTTTCAATGGCAAGCTGTTGGCTGCTATCAATCAAAAGATTCAGCTCTATAAGTGGATGCTTCGAGATGATGGTACACGTGAGTTGCAGTCTGAGTGTGGGCATCATGGGCACATTCTAGCATTGTATGTACAGACTCGAGGTGATTTCATTGTTGTTGGGGACTTAATGAAGTCCATCTCACTGCTAATCTATAAGCATGAGGAAGGTGCTATTGAGGAGCGTGCGCGGGATTACAATGCAAATTGGATGTCAGCTGTGGAGATCCTCGACGATGATGTTTACCTTGGGGCTGAAAATAATTTCAATCTGTTCACTGTAAGAAAGAACAGTGAAGGTGCCACTGATGAGGAGCGAGCACGCCTTGAAGTGGTTGGAGAGTACCACCTTGGAGAATTCATCAACCGTTTCCGACACGGTTCTCTTGTCATGCGACTGCCAGATTCAGACATCGGTCAGATACCAACCGTGATCTTTGGGACTGTCAATGGTGTGATTGGGGTTATTGCCTCACTTCCACACGAACAATACGTCTTTCTGGAGAAGCTGCAGTCAAATTTGAGGAAGGTGATAAAAGGTGTGGGAGGATTGAGTCATGAGCATTGGCGGTCATTTTACAACGAGAAGAAAACAGTAGATGCAAGGAACTTCCTTGACGGAGATCTTATTGAATCTTTCCTTGATCTGAGTCGTGGTCGTATGGAGGAGATCTCAAGAACAATGGGAGTTTCAATAGAGGAACTCTGCAAGAGAGTGGAGGAGTTGACTAGATTGCACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_56187.p1 GENE.S_Transcript_56187~~S_Transcript_56187.p1 ORF type:complete len:1090 (+),score=219.36,MMS1_N|PF10433.5|8.4e-119,MMS1_N|PF10433.5|2e+02,CPSF_A|PF03178.11|1.3e+03,CPSF_A|PF03178.11|4.8e+02,CPSF_A|PF03178.11|2.4e-86 S_Transcript_56187:105-3374(+)
MSIWNYVVTAHKPTNVTHSCVGNFTSPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYGRIATLELFRPHGEAQDFLFIATERYKFCVLQWDPETSELVTRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNMRLEELQVLDIKFLYGCSRPTIVVLYQDNKDARHVKTYEVSLKDKDFIEGPWSQNNLDNGADLLIPVPSPLCGVIIVGEETIVYCSATAFKAIPIRPSITRAYGRVDADGSRYLLGDHAGLLHLLVITHEKEKVTGLKIELLGETSIASTISYLDNAFVYIGSSYGDSQLIKLNLQPDTKGSYVEVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRIVRNGIGINEQASVELQGIKGMWSLRSSTDDVYDTFLVVSFISETRILAMNLEDELEETEIEGFDSQVQTLFCHDAVYNQLVQVTSSSVRLVSSISRELRNEWKAPSGFSVNVATTNASQVLLATGGGHLVYLEIGDGILTEVKHAQLDYEISCLDINPIGENPNYSQLAAVGMWTDISVRIYSLPDLNLITKENLGGEIIPRSVLLCSFEGIAYLLCALGDGHLLNFILNMSSGELTDRKKVSLGTQPITLRTFSSKNTIHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQTRSFAICSLKYNQASAEESEMHFVRLLDDQTFEIISTYALDTYECGCSILSCSFSDDSNVYYCVGTAYVLPEENEPTKGRILIFVVEDAKLQLIAEKETKGAVYSLNAFNGKLLAAINQKIQLYKWMLRDDGTRELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDVYLGAENNFNLFTVRKNSEGATDEERARLEVVGEYHLGEFINRFRHGSLVMRLPDSDIGQIPTVIFGTVNGVIGVIASLPHEQYVFLEKLQSNLRKVIKGVGGLSHEHWRSFYNEKKTVDARNFLDGDLIESFLDLSRGRMEEISRTMGVSIEELCKRVEELTRLH*

Click here to download the sequence:
Link to NCBI Protein BLAST