Transcript Information: S_Transcript_56407.p1


Annotated TAIR IDAT1G52770.1
Annotated Gene NamePhototropic-responsive NPH3 family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:19656009-19657546 | Forward length=454
E-Value1.3E-103
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.72663484601175
Replicate 22.0330898227061
Replicate 32.580724161869
Condition 2: 8 Hour
Replicate 16.4048953853505
Replicate 29.4679495949696
Replicate 33.6375166561402
Condition 3: 24 Hour
Replicate 11.6402301597033
Replicate 21.5470178550408
Replicate 32.5824618844829


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_56407.p1 GENE.S_Transcript_56407~~S_Transcript_56407.p1 ORF type:complete len:293 (+),score=62.82,NPH3|PF03000.10|3.3e-66 S_Transcript_56407:449-1327(+)
ATGAAGAGGGTCACCTTGTCTGAGCCCCCTGTTGCAGGTGCAGGCAAACCACCACAAGCCCCCAAGTATTGGCTTGATGATGCCTGCATCCTCGACATGGACTACTTTGTGAAGACTCTCTCCGGCATCAAGGCCAAGGGGGTCCGGCCCGACTTGGTGGGCTCCATCATAGCTCACTACGCCTCCAAGTGGGTCCCAGAGCTGTCAGAGAGTAGGGATGTTGCCATGGAATTCGAGGGGGATTCAACAACATCCCCAGAGAGTGTGACTGCCAAGTGGAGGAAGAAGCGGTTCTTTGTTGAAACCCTAGTAGGAATCCTCCCCCCGGAGAATGATGCTGTCCCATGCAACTTCTTACTAAGGCTCCTAAGGGTTGCCAACATGTTAGGCATAGACTCTACTTATAAGGAGGAGCTAGAAAGGAGGGTGTCATGGCAGTTAGATCAAGCCTCATTGAAGGAGCTCATGATACCTGCTTTTAGCCACACTTGTGCTACATTGCTTGATTTTGAGCTCGTCAGGAGGTTAGTGGAAAGGTTTATAGGATTAGATGAAGGTGTTAGAAGTGGGGCCGCCTTGATTAAGGTGGCCAAATTGGTGGATTTTTACTTAGCTGAGGCAGCTGTTGATTCCAACTTGAGCTTAGAGGACTTCATGGAGCTTGCTAATGCTTTGCCTTCTCATGCTAGGGCCACAGATGATGGACTTTACCGTGCAATTGATACTTATCTCAAGGTAATGCAATATGCCTCATGTGAGTCATGTACTCCCTCAGTCCCAAAATCAAGTTTCTACTCTCTTTGTAATTTACAACTACACAAGAAGTTGATTTCGGGATGGAGGTTGTATTTAGAGTATGTTTGGCCTAAATTCACCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_56407.p1 GENE.S_Transcript_56407~~S_Transcript_56407.p1 ORF type:complete len:293 (+),score=62.82,NPH3|PF03000.10|3.3e-66 S_Transcript_56407:449-1327(+)
MKRVTLSEPPVAGAGKPPQAPKYWLDDACILDMDYFVKTLSGIKAKGVRPDLVGSIIAHYASKWVPELSESRDVAMEFEGDSTTSPESVTAKWRKKRFFVETLVGILPPENDAVPCNFLLRLLRVANMLGIDSTYKEELERRVSWQLDQASLKELMIPAFSHTCATLLDFELVRRLVERFIGLDEGVRSGAALIKVAKLVDFYLAEAAVDSNLSLEDFMELANALPSHARATDDGLYRAIDTYLKVMQYASCESCTPSVPKSSFYSLCNLQLHKKLISGWRLYLEYVWPKFT*

Click here to download the sequence:
Link to NCBI Protein BLAST