Transcript Information: S_Transcript_56505.p1


Annotated TAIR IDAT5G35080.1
Annotated Gene NameINVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13354552-13356725 | Reverse length=282
E-Value6E-32
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.2426523708259
Replicate 24.1567574528651
Replicate 34.1429334680552
Condition 2: 8 Hour
Replicate 15.5631453001216
Replicate 24.2149859756007
Replicate 34.4794172503222
Condition 3: 24 Hour
Replicate 14.9071839725248
Replicate 24.2699934853988
Replicate 35.483053131547


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_56505.p1 GENE.S_Transcript_56505~~S_Transcript_56505.p1 ORF type:complete len:138 (+),score=28.36,PRKCSH|PF07915.9|4.2e-14 S_Transcript_56505:1353-1766(+)
ATGCCAAATACAAATGGGAAGAGTTATATGTGCTTTCTACCCAAGATTGAGAAGACTAAGAGTGGAACACCGGTCATGCAACATAACACAAGCAGCATGATTATGGAAAGTGAGAAGCGGGTGAAAGCAAAAACTCCAGATGAGCTACTTGAGTTTATGGAGGATCACTGTTTTCTAAGGCAAGAGAGTTGGTGGACATATGAATTTTGCTATAAGAAGCATTTGCGGCAATTTCACTTGGAAGATAACAAGGTGGTTCAGGAGTTCATTCTCGGAACTTATGATCGAGAAGCTACCGCTGCTTACATCCAGAATTTTTCTGATGTTTCTGTATTGAAAGATCCACGTTCCAAAGATGCATCTTTGAGGTATGATACTACCTACAGCATAGCTTCTAGATGCAGGAATAATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_56505.p1 GENE.S_Transcript_56505~~S_Transcript_56505.p1 ORF type:complete len:138 (+),score=28.36,PRKCSH|PF07915.9|4.2e-14 S_Transcript_56505:1353-1766(+)
MPNTNGKSYMCFLPKIEKTKSGTPVMQHNTSSMIMESEKRVKAKTPDELLEFMEDHCFLRQESWWTYEFCYKKHLRQFHLEDNKVVQEFILGTYDREATAAYIQNFSDVSVLKDPRSKDASLRYDTTYSIASRCRNN*

Click here to download the sequence:
Link to NCBI Protein BLAST