Transcript Information: S_Transcript_56510.p1


Annotated TAIR IDAT5G35080.1
Annotated Gene NameINVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:13354552-13356725 | Reverse length=282
E-Value3.9E-98
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.459739870727
Replicate 230.902516499433
Replicate 330.10685062654
Condition 2: 8 Hour
Replicate 135.871848612926
Replicate 236.520931719819
Replicate 332.820758729524
Condition 3: 24 Hour
Replicate 127.99327785053
Replicate 226.190961060084
Replicate 325.97369473507


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_56510.p1 GENE.S_Transcript_56510~~S_Transcript_56510.p1 ORF type:complete len:302 (+),score=40.39,PRKCSH|PF07915.9|8.1e-17,PRKCSH_1|PF13015.2|6.1e-06 S_Transcript_56510:169-1074(+)
ATGAAAATGGCGAAATCCAATTCACTATGGTTGATCGTTGCATATCTTTTCTTGTATTTGTTGATCCATCAAATTTCGGCGAATCAAATAATATCCGCTCAAACAGGTGCATCCCAAAGCCGCAGCTCACGCGAACCTAAATATAAGATTGAATTCCATATGGAAGATTCCCCATACCTTCCTGAGGATGAGCAGGAGTCTGTATTCATGCCAAATACAAATGGGAAGAGTTATATGTGCTTTCTACCCAAGATTGAGAAGACTAAGAGTGGAACACCGGTCATGCAACATAACACAAGCAGCATGATTATGGAAAGTGAGAAGCGGGTGAAAGTAAAAACTCCGGATGAGCTACTTGAGTTTATGGAGGATCACTGTTTTCTAAGGCAAGAGAGTTGGTGGACATATGAATTTTGCTATAAGAAGCATTTGCGGCAATTTCACTTGGAAGATAACAAGGTGGTTCAGGAGTTCATTCTCGGAACTTATGATCGAGAAGCTACCGCTGCTTACATCCAGAATTTTTCTGATGTTTCTGTATTGAAAGATCCACGTTCCAAAGATGCATCTTTGAGGTATCATGCTCATCAATTTACCAATGGAACAACTTGTGACCTTACAAATGATCCTCGAGAAACAGAGGTTAGATTTGTATGTTCAGAGGGCAGATCCATGATTACTTCCATTACAGAGTTGTCCACATGCAAATATGCGCTCACAGTTCAGTCTCAAATGCTTTGTGCACATCCGCTTTTCCAAGAAGAGCGGCCAGTTTGGCATGCCATTCATTGTAATGTGCTTCGCGAGGATACCAAAGATCCGAAAACAGAAGATAATCAACACGCCAAGGAAATAAAATTGGTTCGAGACCTTGAATATCCATTTAATATCGATGCAGATCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_56510.p1 GENE.S_Transcript_56510~~S_Transcript_56510.p1 ORF type:complete len:302 (+),score=40.39,PRKCSH|PF07915.9|8.1e-17,PRKCSH_1|PF13015.2|6.1e-06 S_Transcript_56510:169-1074(+)
MKMAKSNSLWLIVAYLFLYLLIHQISANQIISAQTGASQSRSSREPKYKIEFHMEDSPYLPEDEQESVFMPNTNGKSYMCFLPKIEKTKSGTPVMQHNTSSMIMESEKRVKVKTPDELLEFMEDHCFLRQESWWTYEFCYKKHLRQFHLEDNKVVQEFILGTYDREATAAYIQNFSDVSVLKDPRSKDASLRYHAHQFTNGTTCDLTNDPRETEVRFVCSEGRSMITSITELSTCKYALTVQSQMLCAHPLFQEERPVWHAIHCNVLREDTKDPKTEDNQHAKEIKLVRDLEYPFNIDADQ*

Click here to download the sequence:
Link to NCBI Protein BLAST