Transcript Information: S_Transcript_56554.p1


Annotated TAIR IDAT1G57820.1
Annotated Gene NameZinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)VIM1, ORTH2
Annotation TypeOrtholog
Chromosome Positionchr1:21414342-21417902 | Reverse length=645
E-Value4.6E-286
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.18474178841
Replicate 28.7674353274307
Replicate 37.2324455229806
Condition 2: 8 Hour
Replicate 110.537251686113
Replicate 29.7675783603512
Replicate 313.040283240694
Condition 3: 24 Hour
Replicate 11.4563255660396
Replicate 25.7177982146863
Replicate 36.0994486469889


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_56554.p1 GENE.S_Transcript_56554~~S_Transcript_56554.p1 ORF type:complete len:765 (+),score=212.89,SAD_SRA|PF02182.13|1.3e-47,SAD_SRA|PF02182.13|2.3e+03,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e-07,zf-C3HC4|PF00097.21|5.8e-05,zf-RING_2|PF13639.2|49,zf-RING_2|PF13639.2|6.8e-05,zf-RING_2|PF13639.2|0.00016,zf-C3HC4_4|PF15227.2|1.4e+03,zf-C3HC4_4|PF15227.2|7.4e+03,zf-C3HC4_4|PF15227.2|1.3e-05,zf-C3HC4_4|PF15227.2|9.9e-05,zf-C3HC4_4|PF15227.2|3.2e+03,zf-RING_UBOX|PF13445.2|3.8e+03,zf-RING_UBOX|PF13445.2|0.0036,zf-RING_UBOX|PF13445.2|6.1e-05,zf-C3HC4_2|PF13923.2|1.4e+04,zf-C3HC4_2|PF13923.2|1.5e-05,zf-C3HC4_2|PF13923.2|0.00014,zf-C3HC4_3|PF13920.2|8.6e+02,zf-C3HC4_3|PF13920.2|1e-07,zf-C3HC4_3|PF13920.2|0.33,zf-RING_5|PF14634.2|6.2e+03,zf-RING_5|PF14634.2|4.7e-05,zf-RING_5|PF14634.2|0.00024 S_Transcript_56554:308-2602(+)
ATGGCGGAACTGCCGTGCGACGGGGAGGGGAAGTGCATGAAGTGTTCGAAGAAGCCAACGGAGGGGGAGAAGCTTGTGTGCAAGACGTGCGTCACACCGTGGCATGTCGAGTGCCTTGCGTCTCCTCCTCAGTCCATGTCATTGGTCCGCCAATGGGAGTGCCCTGACTGCTCCGACGTCACCCCCGCCGCTGGTGGCGTCATTGTCAAGTCATCGTCGGTGCCGGCGAGCGACCTGGTGGCCAAGATCAGGGCGATCGAGAATGACGAGACGCTGACGGAGCAGCAGAAGGCCAAGAAGAGACAGTGCCTCATGAGTGGAAAGAATGGTGATGAGTATGATATGGAGGAGGAGAAAGTCAAGGATGATAACGAGATTCTTGAGATTTTGGGAGATAACATCAAGTGCTCCTTCTGTATGCAGCTTCCTCAACGCCCTGTCACTACTCCATGTGGGCACAACTTCTGCTTGAGGTGTTTCGAGAAATGGGTGGGGCAGGGAAAGCAGACGTGTGCCAAGTGCAGGAAAGTTATTCCTGACAAAATGCGTATCCTTCCTAGAATCAACGCGTCTCTTGTTTTGGCAATCAGGATGGCCAGGGTACCAAGCACTACTAAAGTTGCAGCTCCTAGAGTCATTCAGTTTGTGCACAATGAGGATCTGCCTGAAAAGGCATTCACCACTGGCAATGCTAAAAAGTCAGGCAATGCAAATGCCAAAAGTGGAAGAATCTTCGTCACTATCCCGAATGATTATCTTGGACCTATAACTGAAGAGTATGACCCAGTTAAGAAAATGGGTGTTCTAGTTGGTGACAGTTGGGAAGATAGGTTGGCATGCAGACAGTGGGGTGCTCACTTCCCGCATGTTGCTGGTATAGCTGGACAAGCAAACTATGCTGCACAATCTGTGGTTCTTTCTGGAGGCTATGAAGATGATGAGGATCATGGAGAGTGGTTCCTTTATACAGGAAGTGGTGGTCGGGACTTGAGTGGAAACAAGCGCACAAACAAGGAACAGACATCTGACCAAAAATTTACCCTTGGGAATGAGGCACTGCGTCAAAGTTGTAGAAAAGGCTATCCTGTTCGTGTTGTAAGATCCTTCAAAGAGAAGCGTTCTAACTATGCTCCCGAAACTGGTGTGCGTTATGATGGTGTTTACAGAATTGAGAAGTGTTGGAGGAAGCCTGGAAAACAGATATTTAAGGTCTGTCGGTACCTATTTGTCAGATGTGATAACAGTCCTGCACCATGGACAAGTGATGAGCATGGTGATCGACCAAGACCATTACCAAAAGTTCCAGAGCTTAAATTTGCTACGGACTTGACAGAAAGAAAGGAAAGTCCTCACTGGGACTTTGATGAAAAAGAAGGCTGTTGGAAATGGGTGAAGCTTCCACCACCTAGTAGTGCGACTAAGGGAGGAAAAGGGAAAGGAGCTTCTCGTCCTAGGAAAAACTCGAAGGCTAAAATTTTGAAGGAATTTAGCTGTCTCATATGTCACAAGGTTTTGACTCTTCCTGTAACGACTCCTTGTGCACACAATTTCTGCAAATCTTGCCTTGATGGGGCGTTTAAGGGTCAAAGTTTTGTAAGAGAGAGAAATACTGGTGGAAGGCAACTTCGGACACAGAAAACTGCCATGAAATGCCCCTCATGCACCATGAACATCTCTGAATTTCTTCAAAATGTCCAGGTTAATAGGGAGCTAATGGGGGTGATAGAGTCCCTGATGCGCAAATTTGAAGAGGAGGAGAAAGCAGAAGCTGCAGTTGAGGAAGAAAGTTCTGGCAATGTTGAAGATGAGGAGGAAGAGGACCCTGATGAAGAGGAAGAAGACCCTGATGAAGAGGTGGCTGAGGATGATGAGGTTGTGGGCGCTGAAAATGAACTCTTAGAATCTGATGGAATTGAAAGCAAACCAGTTGAGGTGGTTGCTGACATGTCAATCAAGAAATCTGAAGGCGAGAATGGTAATGCCAGTGAAGCTGTCAAGGATTCAGATGGTGGAGACAAGCCTGACCCTTCTGCTGTTCCTGCCAAACGAGGACGTAAGAGGAAAAATGTCACTGCTGAGAAACCAAGCGGCAAGAATGATGCAGACAAGCCAGACCCTTCTGTTCCTGCCAAACGAGGTCGTAAGAGAAAAAATGATGGTGTCACTGCTGGTGCTGGTGCTGGCGCTGGCGCTGCAAGAAGAACAAGAGGCAGGAAAGGCCAGACAGTTGCTGATGATGGAAATGTTTCCCCATCCAGTCCTCTTCATGTGCTCTCGGAAAATGAGCTTGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_56554.p1 GENE.S_Transcript_56554~~S_Transcript_56554.p1 ORF type:complete len:765 (+),score=212.89,SAD_SRA|PF02182.13|1.3e-47,SAD_SRA|PF02182.13|2.3e+03,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|1.6e-07,zf-C3HC4|PF00097.21|5.8e-05,zf-RING_2|PF13639.2|49,zf-RING_2|PF13639.2|6.8e-05,zf-RING_2|PF13639.2|0.00016,zf-C3HC4_4|PF15227.2|1.4e+03,zf-C3HC4_4|PF15227.2|7.4e+03,zf-C3HC4_4|PF15227.2|1.3e-05,zf-C3HC4_4|PF15227.2|9.9e-05,zf-C3HC4_4|PF15227.2|3.2e+03,zf-RING_UBOX|PF13445.2|3.8e+03,zf-RING_UBOX|PF13445.2|0.0036,zf-RING_UBOX|PF13445.2|6.1e-05,zf-C3HC4_2|PF13923.2|1.4e+04,zf-C3HC4_2|PF13923.2|1.5e-05,zf-C3HC4_2|PF13923.2|0.00014,zf-C3HC4_3|PF13920.2|8.6e+02,zf-C3HC4_3|PF13920.2|1e-07,zf-C3HC4_3|PF13920.2|0.33,zf-RING_5|PF14634.2|6.2e+03,zf-RING_5|PF14634.2|4.7e-05,zf-RING_5|PF14634.2|0.00024 S_Transcript_56554:308-2602(+)
MAELPCDGEGKCMKCSKKPTEGEKLVCKTCVTPWHVECLASPPQSMSLVRQWECPDCSDVTPAAGGVIVKSSSVPASDLVAKIRAIENDETLTEQQKAKKRQCLMSGKNGDEYDMEEEKVKDDNEILEILGDNIKCSFCMQLPQRPVTTPCGHNFCLRCFEKWVGQGKQTCAKCRKVIPDKMRILPRINASLVLAIRMARVPSTTKVAAPRVIQFVHNEDLPEKAFTTGNAKKSGNANAKSGRIFVTIPNDYLGPITEEYDPVKKMGVLVGDSWEDRLACRQWGAHFPHVAGIAGQANYAAQSVVLSGGYEDDEDHGEWFLYTGSGGRDLSGNKRTNKEQTSDQKFTLGNEALRQSCRKGYPVRVVRSFKEKRSNYAPETGVRYDGVYRIEKCWRKPGKQIFKVCRYLFVRCDNSPAPWTSDEHGDRPRPLPKVPELKFATDLTERKESPHWDFDEKEGCWKWVKLPPPSSATKGGKGKGASRPRKNSKAKILKEFSCLICHKVLTLPVTTPCAHNFCKSCLDGAFKGQSFVRERNTGGRQLRTQKTAMKCPSCTMNISEFLQNVQVNRELMGVIESLMRKFEEEEKAEAAVEEESSGNVEDEEEEDPDEEEEDPDEEVAEDDEVVGAENELLESDGIESKPVEVVADMSIKKSEGENGNASEAVKDSDGGDKPDPSAVPAKRGRKRKNVTAEKPSGKNDADKPDPSVPAKRGRKRKNDGVTAGAGAGAGAARRTRGRKGQTVADDGNVSPSSPLHVLSENELE*

Click here to download the sequence:
Link to NCBI Protein BLAST