Transcript Information: S_Transcript_56623.p1


Annotated TAIR IDAT5G04560.2
Annotated Gene NameHhH-GPD base excision DNA repair family protein
Annotated Gene Symbol(s)DME
Annotation TypeOrtholog
Chromosome Positionchr5:1309786-1318091 | Forward length=1987
E-Value3.4E-258
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.6659421107522
Replicate 28.7585948494657
Replicate 37.7292672832778
Condition 2: 8 Hour
Replicate 18.1765190009912
Replicate 27.9144630363656
Replicate 39.5546412380117
Condition 3: 24 Hour
Replicate 17.0913541381527
Replicate 27.3116417246307
Replicate 37.1737071021586


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_56623.p1 GENE.S_Transcript_56623~~S_Transcript_56623.p1 ORF type:complete len:1990 (+),score=381.57,RRM_DME|PF15628.2|1.5e+04,RRM_DME|PF15628.2|3.8e-52,Perm-CXXC|PF15629.2|3.1e-11 S_Transcript_56623:738-6707(+)
ATGATGGAAACTCATGAGGGAAAAACAGCTCCCGTTGTAAAAGAGTTCCAGATACAAGGCTCTTGGACTCCAGTAACCCCAGTAAAGCCAATACTACCCCGGCCGAGACCGATCTATGAAGATGGGCAAGGAGGGGTTTTAGGACAAGCCTACATGAGAGAATCAGAGGATTATCTCTCAAGATTTTCATACCAAAATCAAGCACACACACTTTTATCATGTTCAATAAGCTCTGCAGAAAGGGGCAACCCATATAACAGTAGTAATATTAACAGCCATAATAATAATGATGATAATACCACCATTTGGGATGATCCTCATGGTAGTACAACTCCCTTACCAGGGAAAATCAATTTGCAAAGAGAAAATGGCGAATCGCAAAGACAGGGTTTGGAGGATTACTTGCCTCATTGGAGTAGTCAAGGCAAGAGAAGAATGGCCTCCTCATTTGGAACAGGAAACCCAGTTCCAAGTAATTACCCCTCATTTAGCTCTTGGGAGTCGCCTCTCTCCTGGAAAAATAATGGGTTGAGAGAAAATGTCAGCATGCTACAGCATAATAATTCCCATGACCCTCTTGCTCAATTTGACAATTTCTCCTTTGGAGAGCTCTTGGCCGCGAATGGTTCAGCATTAGAGCCTTCAGTGATCTCATCAAGCCAAGGAGATACCGGTGGTACTCCAAGAGGTTCCATTTATTCCGGTTGGAATACTCAACCTCAAGACAGCAGATTCGACAGCAACGCAATGTACAGGAATCAGGACTCCTTTCCTGGACTGAACCAGCAAATCAATGGCATCTGTGTACAAGAAATGCACGGTGCTTTTCCCCATCAGCTTTGGAGCAATATTAACTCCCCTCCAAGCACAAAGCATGCAAATGGAAAGAATTCTACTTTTGCTCCTCCAACTCCAGATTTACAGAGCAGAGCTGAGAGTAATGTGGCTTCAGGAAATGCAATACCTGGACTAAATCAAAGGCCTGATGAGCAAAACGGGTTGCAGGAACATGAAGCCGCTGTTGCAATGATCAATCTTCACGACCTCAACCATAAAGATGTCACAGAGCCCACTACAGATTCATCACTTGGTAAAGTCTCCGCAATAGTGGAGGAGAATCAAAACCCTGAGAAGGAAGCCAACCAGATTATTGACCTGAACAAAACACCACAAAAAAGACCACGAAGAAAAAGGTACATGCCTAAGGTGGTCAATGAAAATAAGCCTAAACGGACCCCAAAACCTAAGACCCCCAAGCCCACTGATGCCAAAGAAAATCCGAAACCTAAAAGGAAGTATGTGCGAAAGAACAAGAGCACACCATCAACAACTTCTCCTGAAGGAACAACAGAACCTAATGATCCTAAACCTGCAGAACCAAAAGCCAAATCCTGCAAAAAGTCCTTAAACTTTGATTTGAATGGGCAAGTCCCAGAACATAACCCTGTGCCTATGTCAAAGGATGGCTCATGTGCAGACCCAAATGACTCTCACGTTGCAGGAAACCAATCCAGCAACACTGTTGATCTTAGGCAGGGAGAAGAATTGATGGTCAAATCATCGCAAGTAGGCATAGCATATGACCTGAACTGTAGCCTGAGTCAGGAACCAAGAAACTATATCTCTCTTCCTGAAAAAGTTAACCTAGATGATTCACAACCTGACCACACTGTTCCCACTGAAGGGAATGAGAAGGCTACTAGCAGCTCATTAGGACCCAATGCTGAAGTGCCATCCAGAGAAGATGCTTGCTTGGCACAAAGTCCAAACTCCAGTCCTTGCACAAGTTCTAATGAAGCGGTTCAAGCAAGAGGATCCAAGAGGGGGCATTCCAGTGTGCATGATACCACAGATGTTGATGCTGGAAATTTGGCTGCCAATTCCAGTAAATCTTGGCATACAAACGACACATTTTTAGGGGATGAAAATACCGAAGGGGTTCCAACCTTTCCCTTTCCAGGGATTCACAAGAAAAAGAGAACTGAGAAGGGACAAAGGTCGCACACATCAAGCACATCTTCTTCTGTTACGGCTTCTGAAGACTTTAGCCAAGCAGCTAATATTCATATTCATCCAAGAGTTGATCCCGCTGCATCAAAGTACTACTACTGCAATCCTGCCTCTTATGGAAACAATCTGGTGACAAATAGTCAGGTACAATTGTTGATGAGAAGTGAAGAAAACAGAGCACAACTTTTGAATACTTGGGTTGACATTGCAAGGCTAAAGAAGAAAAAGCGAACGAAAGGAGCGACCCGTGTCCGTGATCTGGCTCCGCTAAAAGGAATTGCATCTGTCTCACCTGCCAAACCAGCAATGAAAAGGCCGGGCAGAAGGAAGAACGACACTTTAAATAAGCCTTGTCCTGGCACAGGCAATATTAATCTGTCAAATGGTGTCCATTCCTGTATGGAGGCCCTGAGTGAGGACACCCATGGAACCCCAAGATCAAAAAGGAGATACAGAAAACAGAATTCTGCAATTAATTCAAGGACGTACAAGGTGAACCAGCCTTTGGAACTGGTGCTGTATGATGGTAACCAGGCTATTAGGAACACAACAGTTCCCGTTTCAGTGGTACCATGGGTAAATGTCTCTGTCGAAGCAATCACCGAGGGAATGAAGAGGCTCGATATCAATAGAAAAGGCCGCAAAATCTCACGTCAAGAACAGAAGGCACTTGTCCCTTACAATGTAAACAACCAGGCACAGAATGCAATTGTTCCTTATGAAAACAATGGGACTATTGTTCCATTTGAACCCATGAGAAGGCGGCGTCAAAGGGCCAAAGTTGACCTTGATGATGAGACTACACGAGTGTGGAGACTTCTTCTCGAGAACATTGATAACAAAGGTATTGACGGCACTGATGAGGAGAAAGCAAAATGGTGGGAAAATGAACGAAGTGTCTTCCAAGGACGTGTGGATTCATTCATCGCCCGCATGCGTCTTGTTCAAGGGGATAGACGCTTCACTCCATGGAAAGGATCTGTCTTGGACTCTGTCATTGGAGTTTTTCTTACTCAGAATGTGTCTGATCACCTGTCTAGTTCTGCTTTCATGTCGCTCGCTGCACGTTTTCCTCTCAAGTTCGAGAGTACTGAAAGCACGCTTTCGGAAGAGGCCTCAAGTGCCTTGGTTGCTGAACCAAACTTTGGTATTATTGATGCTGAAGAAAGTATCACATGGATTGACAAGCCATTGGATCAACCAATTTGTGACATGGATTCTAGGATAATCCCTGAGATTGAACATAGTGAAGAAAGAGAGGTAGTTAATAGCAAAGAAATGATTGGAGGTGCCCCTGGTTCAGTTAGCCCCGTAGATTACTCTAGTGAAAGCAGTCAAAAGGCCCCCGTTGAAATAAGAGTACATAATGCAAATATCCAAACCACAGAGACAGAAGCAACAAGTATTGTAGGAGATGATAGAGCAAGAGATGATGCGACTTCATCACAGCAGTCAGTAATTTCATCCCAGAACTCTGTCAACTCCCCAAATTTGCAGACAAAGGGGATGGTGGGTACATTTTCAGATAACAATTCAAGAGCTCAGAACAGTTCAAATTGCAATTATTATCATTGTTCTTCTTTTACTGGGCTGCTAAAAATGGCCGAAGCTCCCTTCCATTATGGTTTGATGGGTCAACTAGAATGTATGAACCATGTTGTGAAAGATTCTCCCGAAGCACCAGGTATCTCTGCAAATGATTACCTGTTGCATCTGAAAACAGATTTCCGTTTACAAGGCACACGCAGCAGTGAACTGCTAGAAGTAGAAAGTAGATCTTCTAATACATCCAGAAAAGATGAAAATAGCACAACTGAAATAAGCAATCTCTCAACAGAATCAACAGTACATCTTGTAATGGATAAGAGTTCAGATGGCATTCAGAGACCTTTTGCTGAAAATGTGAGCTCTTGCTACGTCCTTGAAGGAGAGAATATGGTTATACAATCAGAAGGGCAATCAATGAAAGAAATACAAGTTAATGTCTCTTCATCTGCCCAAGCACAAACAAGTTCAATTTGGGGACATCCAAATTTGCTAAAGTCACTACAACATAATGATGATGTTACTGAAAGTACCACAGCTTTGGTCAGGAAAAGCAATGAGCAGAAGGAAAACAGACAGAATTCAGGGCACAACCATGTATCAGATGGGGTTTCTGATATAACCAATGTTGATCCTAGTAAGCCAAAGAAAGGCAGGGCTGGAAAGGAGAAAAGAAACCCATACAACTGGGACAATCTGCGAAAAGAGGCTCAAGTTAATGGTATAAAAAGAGAAAGAACAGCCAACACAAGGGACTCACTAGACTGGGAAGCAGTAAGACATGCTAATGTCCATGAAATTGCTGACACCATTAAAGAGAGGGGCATGAATAACATGCTTGCTGAAAGAATAAAGGATCTCTTGGACAGACTAGTCAAGGACCATGGCAGTGTCGACATGGAGTGGTTGAGAGATATTCCCCCAGACAAAGCAAAAGAATACTTACTGAGCTTTAGAGGCTTGGGTTTGAAGAGTGTAGAGTGCGTCCGACTTTTGACACTGCACCATCTTGCATTCCCAGTCGACACAAATGTTGGCCGAATTGCTGTACGACTTGGGTGGGTTCCTCTCCAGCCTCTACCAGAATCGCTTCAACTGCATCTTCTAGAATTGTACCCAGTGTTGGAGTCCATTCAGAAGTACTTATGGCCACGGCTATGCAAGCTTGATCAAAAGACATTGTATGAACTTCATTACCACATGATCACCTTCGGAAAGGTATTTTGCACAAAAAGGCAGCCTAACTGCAATGCATGTCCCTTGAGAGGAGAGTGCAGGCATTTCGCTAGTGCATTTGCAAGTGCTAGGCTTGCTCTCCCAGGCCCGGAAGAAAGAAGCATTATGCCCTCAGCTGGGAGCAATTCAGCACATCTTCATCCCCAAGCTAATATCAACCCTTCACCATTGCCTCCCTCTTGGAGCAACCAACACCAAAACACAAACTTTGGAAGCAACAAATATCCACCTATGATTGAAGTTCCATCTACCCCGCTGTCACTGCCCTTGCCACAGACAATCCATCACTTGCAGAGGCCATCTCAAATTAACTGTGAGCCAATTGTGGAAGTTCCTGCCTCACCAGAACCAGAACCAGAACCAGAACAGGAACATACATTAGGCGACATTGAAGATACTTTCTATGAGGATCCTGATGAAATTCCAACAATCAAGCTTAACATGAAACAGTTCACTCAGACACTTCAGAACTTTATGCAAGCAAACAAGGAACTTCAAGAGACTGGAATGTCAAGGGCCTTGGTGGCATTGACACCTGACACTGCTTCTATTCCTACACCAAAGCTCAAGAACATCAGCCGGCTAAGAACGGAGCATCATGTCTACGAACTTCCTGACACACATCCTCTTTTAAAAAACTTGGACAAACGGGAACCTGATGATCCGTGTTCATACCTTCTTGCAATATGGACCCCAGGTGAGACAGCAGACTCAATCCAACCTCCTGAAAGAAGATGCAACTTTGAAGATCCAGGCATACTTTGCAATGAGGAGACATGTTCCTACTGTAGCAGTCAGCGAGAAGCAAACTCCCAAATTGTGCGGGCAACACTTTTGATACCGTGCAGAACAGCGATGAGAGGCAGCTTCCCACTCAATGGAACTTACTTCCAAGTCAATGAGGTGTTTGCAGACCATGAATCAAGCCTTAACCCACTTCATGTGTCCAGAGAATTGTTGTGGAATCTGCCAAGACGAACTGTATACTTTGGAACCTCTATACCAACCATATTCAGAGGTCTAACCACTGAAGATATTCAGCATTGCTTCTGGAGAGGATATGTTTGTGTGAGGGGGTTTGATCAAAAAACAAGAGCACCTCGTCCACTCATGGCAAGATTGCATTTTCCAGCCAGCAGGATGCCGAGGGGCGCAAAAGGTAAGCCAAATGATGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_56623.p1 GENE.S_Transcript_56623~~S_Transcript_56623.p1 ORF type:complete len:1990 (+),score=381.57,RRM_DME|PF15628.2|1.5e+04,RRM_DME|PF15628.2|3.8e-52,Perm-CXXC|PF15629.2|3.1e-11 S_Transcript_56623:738-6707(+)
MMETHEGKTAPVVKEFQIQGSWTPVTPVKPILPRPRPIYEDGQGGVLGQAYMRESEDYLSRFSYQNQAHTLLSCSISSAERGNPYNSSNINSHNNNDDNTTIWDDPHGSTTPLPGKINLQRENGESQRQGLEDYLPHWSSQGKRRMASSFGTGNPVPSNYPSFSSWESPLSWKNNGLRENVSMLQHNNSHDPLAQFDNFSFGELLAANGSALEPSVISSSQGDTGGTPRGSIYSGWNTQPQDSRFDSNAMYRNQDSFPGLNQQINGICVQEMHGAFPHQLWSNINSPPSTKHANGKNSTFAPPTPDLQSRAESNVASGNAIPGLNQRPDEQNGLQEHEAAVAMINLHDLNHKDVTEPTTDSSLGKVSAIVEENQNPEKEANQIIDLNKTPQKRPRRKRYMPKVVNENKPKRTPKPKTPKPTDAKENPKPKRKYVRKNKSTPSTTSPEGTTEPNDPKPAEPKAKSCKKSLNFDLNGQVPEHNPVPMSKDGSCADPNDSHVAGNQSSNTVDLRQGEELMVKSSQVGIAYDLNCSLSQEPRNYISLPEKVNLDDSQPDHTVPTEGNEKATSSSLGPNAEVPSREDACLAQSPNSSPCTSSNEAVQARGSKRGHSSVHDTTDVDAGNLAANSSKSWHTNDTFLGDENTEGVPTFPFPGIHKKKRTEKGQRSHTSSTSSSVTASEDFSQAANIHIHPRVDPAASKYYYCNPASYGNNLVTNSQVQLLMRSEENRAQLLNTWVDIARLKKKKRTKGATRVRDLAPLKGIASVSPAKPAMKRPGRRKNDTLNKPCPGTGNINLSNGVHSCMEALSEDTHGTPRSKRRYRKQNSAINSRTYKVNQPLELVLYDGNQAIRNTTVPVSVVPWVNVSVEAITEGMKRLDINRKGRKISRQEQKALVPYNVNNQAQNAIVPYENNGTIVPFEPMRRRRQRAKVDLDDETTRVWRLLLENIDNKGIDGTDEEKAKWWENERSVFQGRVDSFIARMRLVQGDRRFTPWKGSVLDSVIGVFLTQNVSDHLSSSAFMSLAARFPLKFESTESTLSEEASSALVAEPNFGIIDAEESITWIDKPLDQPICDMDSRIIPEIEHSEEREVVNSKEMIGGAPGSVSPVDYSSESSQKAPVEIRVHNANIQTTETEATSIVGDDRARDDATSSQQSVISSQNSVNSPNLQTKGMVGTFSDNNSRAQNSSNCNYYHCSSFTGLLKMAEAPFHYGLMGQLECMNHVVKDSPEAPGISANDYLLHLKTDFRLQGTRSSELLEVESRSSNTSRKDENSTTEISNLSTESTVHLVMDKSSDGIQRPFAENVSSCYVLEGENMVIQSEGQSMKEIQVNVSSSAQAQTSSIWGHPNLLKSLQHNDDVTESTTALVRKSNEQKENRQNSGHNHVSDGVSDITNVDPSKPKKGRAGKEKRNPYNWDNLRKEAQVNGIKRERTANTRDSLDWEAVRHANVHEIADTIKERGMNNMLAERIKDLLDRLVKDHGSVDMEWLRDIPPDKAKEYLLSFRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQKTLYELHYHMITFGKVFCTKRQPNCNACPLRGECRHFASAFASARLALPGPEERSIMPSAGSNSAHLHPQANINPSPLPPSWSNQHQNTNFGSNKYPPMIEVPSTPLSLPLPQTIHHLQRPSQINCEPIVEVPASPEPEPEPEQEHTLGDIEDTFYEDPDEIPTIKLNMKQFTQTLQNFMQANKELQETGMSRALVALTPDTASIPTPKLKNISRLRTEHHVYELPDTHPLLKNLDKREPDDPCSYLLAIWTPGETADSIQPPERRCNFEDPGILCNEETCSYCSSQREANSQIVRATLLIPCRTAMRGSFPLNGTYFQVNEVFADHESSLNPLHVSRELLWNLPRRTVYFGTSIPTIFRGLTTEDIQHCFWRGYVCVRGFDQKTRAPRPLMARLHFPASRMPRGAKGKPNDE*

Click here to download the sequence:
Link to NCBI Protein BLAST