Transcript Information: S_Transcript_57110.p1


Annotated TAIR IDAT5G52180.1
Annotated Gene NameLOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, predicted (InterPro:IPR019395); Has 82 Blast hits to 82 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21200165-21201541 | Reverse length=458
E-Value1.1E-159
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.9140002744846
Replicate 24.3478033928855
Replicate 34.4463619488764
Condition 2: 8 Hour
Replicate 111.579195161714
Replicate 212.241200199096
Replicate 313.540255396875
Condition 3: 24 Hour
Replicate 13.6179157143751
Replicate 23.6585188498506
Replicate 33.2783370086314


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_57110.p1 GENE.S_Transcript_57110~~S_Transcript_57110.p1 ORF type:complete len:477 (+),score=76.69,Tmemb_161AB|PF10268.5|2.2e+03,Tmemb_161AB|PF10268.5|1.4,Tmemb_161AB|PF10268.5|3.4e-09 S_Transcript_57110:176-1606(+)
ATGTATTCAATCTTTCTCTCATACAAAAACCTGATCTTTCAAATCTCACTCTCCCTTTCACTCTCAATTCTCTTTTATTTCATCAATCTACCATCCCTCTTTCTTCAAGGCCTCAACACTTACATCCACCCAGATGATGTTAACCCCACAAAACCCCAATCTGGTCCCAAAGTTGCCATTAGAAGACCTTCTGACAACAACAATCCCAACCAAGGCCTTAATGGGTTTCAGTCACTTTCATCAAAGACATCTTCTGAACTCAGAAACAGGAAGAAACCACCCAAGGAAAAATTTGAATTTGATGAGAGTAAAGCTCAGATCTTTCGGCTTAAACTAGGTGATGCGCATATACACTCACGCCTTTATTATGATAGCTATAGAAGTTGCTTTAATTCCTTTGTTATTTCTTGTTCTTGCTTTTGTTTGCATAAGTATTTGAATGTGGGTGTTGATGATAATGATAATGATGGGTCTGGGGTGTTAAAAAATGGGTCTTTAGTTCCAATTGTAATTGGGGTTTTGGGTTTGTTTAGGGTTCTGATTTCACTGTTTCGAGTTTCGCTCGAAAGATCTGCTTTTAAGAGGAGTGAAAGGCAATTGGGATTGGTGGTTGGGGTTTTGGGGTTTTTTTTAGGACTTGTGATCTGCTTGGGAGTGTATCCTGGATTGTTTGACTTTGAATTTAGCTCAGTTGATGGTTTTGGGAGATTGTTTACGTCTCTCCTTGCTGGTTCTATAGCCGGTTTCTTGTACCTCGCCGCTGGTAAGAATGCTCGAGCATTCTGGCTTGGAACTGATCAAATAAGGTGTAATTTGTCGATAATTTCGTGTGGAGGGATTGCTCAGACGTTTCTTTATGCTAATTATTTGATGGATGCATTTACTTCATTGCTTTGGATCAAGCCATTTGCTGCAATTCTTGTGAACAAGGGCATTGGTGGTAGTAGAGATGCACAAGGTATTGGAGACAGGGCAAAGTTGGTTGGAAATGTGGGTATGGTAGAAGCCGAGTTTGTCAAGTTTAGGTTATGGTGCTTGTTGCTTTCAGGGCTTTTTCAGGTTTTTGTGTTGCGTGTCAATCTACAAACATACTTGAATGAGGTGGTTTTATCTTGGTACCAAAGGTTGCATGCTAGCATGGTTCCTGAGATGGATTACAGCAGGGCTAAGGTTTTTCTGCATAATCACTTCTTGTGCCTTGCTGTTTTGCAATTTTTTGCCCCAGCAGCATTGATACTTATCTCTCTGGGCTTGGCTCAGGTTGATGGTGGTTTGTTTGAGAACTTTCAACTGGCTTGTAGTTTGCTGCCTTGCTCGGCTTTCGTTAAAGAAGTTGCCCTTTTCCTGGCTTGGTGGGTGGCCTTTTTATGGTTTGTTTTCACCTCAGTGTACCTTGCTTTCTATAGGCGTGGATTTTTGTATGTTTCGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_57110.p1 GENE.S_Transcript_57110~~S_Transcript_57110.p1 ORF type:complete len:477 (+),score=76.69,Tmemb_161AB|PF10268.5|2.2e+03,Tmemb_161AB|PF10268.5|1.4,Tmemb_161AB|PF10268.5|3.4e-09 S_Transcript_57110:176-1606(+)
MYSIFLSYKNLIFQISLSLSLSILFYFINLPSLFLQGLNTYIHPDDVNPTKPQSGPKVAIRRPSDNNNPNQGLNGFQSLSSKTSSELRNRKKPPKEKFEFDESKAQIFRLKLGDAHIHSRLYYDSYRSCFNSFVISCSCFCLHKYLNVGVDDNDNDGSGVLKNGSLVPIVIGVLGLFRVLISLFRVSLERSAFKRSERQLGLVVGVLGFFLGLVICLGVYPGLFDFEFSSVDGFGRLFTSLLAGSIAGFLYLAAGKNARAFWLGTDQIRCNLSIISCGGIAQTFLYANYLMDAFTSLLWIKPFAAILVNKGIGGSRDAQGIGDRAKLVGNVGMVEAEFVKFRLWCLLLSGLFQVFVLRVNLQTYLNEVVLSWYQRLHASMVPEMDYSRAKVFLHNHFLCLAVLQFFAPAALILISLGLAQVDGGLFENFQLACSLLPCSAFVKEVALFLAWWVAFLWFVFTSVYLAFYRRGFLYVS*

Click here to download the sequence:
Link to NCBI Protein BLAST