Transcript Information: S_Transcript_57115.p1


Annotated TAIR IDAT5G52180.1
Annotated Gene NameLOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, predicted (InterPro:IPR019395); Has 82 Blast hits to 82 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21200165-21201541 | Reverse length=458
E-Value6E-41
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4339356432491
Replicate 21.1387246223234
Replicate 32.4986932758427
Condition 2: 8 Hour
Replicate 14.2650780634266
Replicate 25.773380294123
Replicate 34.4006911184478
Condition 3: 24 Hour
Replicate 10.84560839318429
Replicate 21.1697451136179
Replicate 30.97633720277869


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_57115.p1 GENE.S_Transcript_57115~~S_Transcript_57115.p1 ORF type:internal len:155 (-),score=24.97,Tmemb_161AB|PF10268.5|2.5e-09 S_Transcript_57115:2-463(-)
GTGTATCCTTGGTTGTTCGACTTTGAATTTAGCTCAGTTGATGGTTATGGGAGATTGTTTATGGCTCTCCTAGCTGGTTCTATAGCCGGTTTCTTGTACCTCGCCGCTGGTAAGAATGCTCGAGCATTCTGGCTTGGAACTGATCAAATAAGGTGTAATTTGTCGATAATTTCGTGTGGAGGGATTGCTCAGACGTTTCTTTATGCTAATTATTTGATGGAGGTGTTTACTTCATTGCTTTGGATCAAGCCATTTGCTGCAATTCTTGTGAACAAGAGCATTGGTGGTAGTAGAGATGCACAAGGTATTGGAGACAGGGCAAAGTTGGTTGGAAATGTGGGTATGGTAGAAGCCGAGTTTGTCAAGTTTAGGTTATGGTGCTTGTTGCTTACAGGGCTTTTTCAGGTTTTTGTGTTGCGTGTCAATCTACAAACATACTTGAATGAGGTGGTTTTATCTTGG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_57115.p1 GENE.S_Transcript_57115~~S_Transcript_57115.p1 ORF type:internal len:155 (-),score=24.97,Tmemb_161AB|PF10268.5|2.5e-09 S_Transcript_57115:2-463(-)
VYPWLFDFEFSSVDGYGRLFMALLAGSIAGFLYLAAGKNARAFWLGTDQIRCNLSIISCGGIAQTFLYANYLMEVFTSLLWIKPFAAILVNKSIGGSRDAQGIGDRAKLVGNVGMVEAEFVKFRLWCLLLTGLFQVFVLRVNLQTYLNEVVLSW

Click here to download the sequence:
Link to NCBI Protein BLAST