Transcript Information: S_Transcript_57116.p1


Annotated TAIR IDAT5G52180.1
Annotated Gene NameLOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane protein 161AB, predicted (InterPro:IPR019395); Has 82 Blast hits to 82 proteins in 35 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21200165-21201541 | Reverse length=458
E-Value3E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.90213563509086
Replicate 20.74789117144118
Replicate 30.46888312076951
Condition 2: 8 Hour
Replicate 12.8915783480858
Replicate 22.843879064372
Replicate 31.806427763134
Condition 3: 24 Hour
Replicate 10.37025226255244
Replicate 20.38413239959911
Replicate 31.068730695132


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_57116.p1 GENE.S_Transcript_57116~~S_Transcript_57116.p1 ORF type:5prime_partial len:118 (-),score=9.02 S_Transcript_57116:391-744(-)
GAAAGATCTGAGCTTTACTCTCAGATCTTTCGGCTTAAACTAGGTGATGCGCATATACACTCACGCCTTTATTATGATAGCTATAGAAGTTGCTTTAATTCCTTTGTTATTTCTTGTTCTTGCTTTTGTTTGCATAAGTATTTGAATGTGGGTGTTGATGATAATGATAATGATGGGTCTGGGGTGTTAAAAAATGGGTCTTTAGTTCCAATTGTAATTGGGGTTTTGGGTTTGTTTAGGGTTCTGATTTCACTGTTTCGAGTTTCGCTCGAAAGATCTGCTTTTAAGAGGAGTGAAAGGCAATTGAATTTAGCACAGTTGATGGTTACGGGAGATTGTTTATCGCTCTCCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_57116.p1 GENE.S_Transcript_57116~~S_Transcript_57116.p1 ORF type:5prime_partial len:118 (-),score=9.02 S_Transcript_57116:391-744(-)
ERSELYSQIFRLKLGDAHIHSRLYYDSYRSCFNSFVISCSCFCLHKYLNVGVDDNDNDGSGVLKNGSLVPIVIGVLGLFRVLISLFRVSLERSAFKRSERQLNLAQLMVTGDCLSLS*

Click here to download the sequence:
Link to NCBI Protein BLAST