Transcript Information: S_Transcript_5730.p1


Annotated TAIR IDAT2G21940.4
Annotated Gene Nameshikimate kinase 1
Annotated Gene Symbol(s)SK1, ATSK1
Annotation TypeOrtholog
Chromosome Positionchr2:9351106-9352881 | Forward length=304
E-Value4E-98
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 124.433096697145
Replicate 230.872845455908
Replicate 324.611296275385
Condition 2: 8 Hour
Replicate 125.401232835083
Replicate 221.531949885334
Replicate 325.608117259227
Condition 3: 24 Hour
Replicate 131.537152616114
Replicate 232.796778526865
Replicate 334.260661000806


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5730.p1 GENE.S_Transcript_5730~~S_Transcript_5730.p1 ORF type:3prime_partial len:293 (+),score=50.88,SKI|PF01202.18|4.5e-45,AAA_18|PF13238.2|5.9e-08 S_Transcript_5730:377-1252(+)
ATGGAGGCTAAACTTGTTCAAAGCATTCGGCCTTGTGCTTGGATGGATACACGAAAAATGATGAAAAGTCCCAGTGGGTTGACCTGGGTATCTCCAAGAACTAAGGAAAAACAAGGGATTCAGATAATGGCTATACGATCGAGTAAGAGCTCGGTTTGTCACAAGCCACTTGCTTTAAGGGTTTCATGTTCTTTGAAAAATTCTCAAGGTTCTGTGGTGGAGTCTGGTGCCTTTGCTACTTCGCTGAACGAGTCTGTAGTCTTGAAGAATAAGGCACACGATATTGAGCCATATTTAGATGGACGCTGCATATACCTTGTTGGTATGATGGGCTCTGGAAAGACAACGATTGGCAAGATTTTGTCAGAAGCTCTTGATTATTCGTTCTCTGATAGTGATGTTTTTATAGAACAGACGGTTGGTGTGTCTGTCGCAGAAATCTTTAAGCAACATGGAGAAGGTTTTTTCAGGGACAGGGAGACAGAGGCATTGCAGAAGCTATCTTCAATGCGCCAACTAGTTGTTTCCACTGGTGGAGGGGCGGTTATCAGGCCCATCAACTGGAAGCACATGCAAAGCGGTATCAGTGTCTGGCTAGATGTACCAATCGATTGCTTAGCACGGAGAATTTCAGCCGTAGGAACTGGTTCTCGCCCCTTATTGGACGGTGAATCAGGGGATGCTTACACTAAGGCTTTTAAACGTTTGTCCACACTATTTCAAGAAAGGGGGGAAGCATATGCCAAAGCTAGTACCCGAGTTTCTTTGGAATATTTGTCAGAGAAACTAGGGCATGTAGAGGTAGATAAGCTTACTCCAAGCAATATTGCCATTGAGGTGCTTGAACAAATTGAGAGCTTTCTTAAGGAGGATGGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5730.p1 GENE.S_Transcript_5730~~S_Transcript_5730.p1 ORF type:3prime_partial len:293 (+),score=50.88,SKI|PF01202.18|4.5e-45,AAA_18|PF13238.2|5.9e-08 S_Transcript_5730:377-1252(+)
MEAKLVQSIRPCAWMDTRKMMKSPSGLTWVSPRTKEKQGIQIMAIRSSKSSVCHKPLALRVSCSLKNSQGSVVESGAFATSLNESVVLKNKAHDIEPYLDGRCIYLVGMMGSGKTTIGKILSEALDYSFSDSDVFIEQTVGVSVAEIFKQHGEGFFRDRETEALQKLSSMRQLVVSTGGGAVIRPINWKHMQSGISVWLDVPIDCLARRISAVGTGSRPLLDGESGDAYTKAFKRLSTLFQERGEAYAKASTRVSLEYLSEKLGHVEVDKLTPSNIAIEVLEQIESFLKEDG

Click here to download the sequence:
Link to NCBI Protein BLAST