Transcript Information: S_Transcript_57550.p1


Annotated TAIR IDAT5G09310.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379); Has 168 Blast hits to 168 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2887403-2888501 | Reverse length=146
E-Value1.2E-70
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 140.856579361052
Replicate 247.854501293764
Replicate 347.145867593993
Condition 2: 8 Hour
Replicate 144.302747489819
Replicate 246.319179578025
Replicate 347.135043295522
Condition 3: 24 Hour
Replicate 141.382208865985
Replicate 235.751364740154
Replicate 343.339287569354


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_57550.p1 GENE.S_Transcript_57550~~S_Transcript_57550.p1 ORF type:complete len:142 (+),score=18.55,PEN-2|PF10251.5|1.1e-28 S_Transcript_57550:68-493(+)
ATGGAGAGGAGATCAGAAGCAGGGGGGCAAGAGGAGCCAAGTCTCCTCCCACTACGCAACCCAACTCCCTCAACAATTTCATCATCATCACTTCGTTGGCCTACAATTGACGGTCCATTGGGTCTCTCTGAGGAAGAATCTTTAACCTACGCTCGTAGATTCTACAAATTCGGGTTTTTACTCCTCCCTTGGCTTTGGGCTGTCAATTGCTTCTACTTCTGGCCTGTTCTTCGCCACTCTCGTTCCTTCCCTTCCTTTCGTCCCTATGTTGTCAGATCTGCCATAGGATTTACTATCTTCACGGTTCTTCTGTCTTCGTGGGCATTAACATTCTCAATTGGAGGGGAGCATCTTTTCGGGCCAGTTTGGAATAAACTTGTAATGTACAATGTAGCTGATGAGTTGGGTTTGACGGGCTGGATGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_57550.p1 GENE.S_Transcript_57550~~S_Transcript_57550.p1 ORF type:complete len:142 (+),score=18.55,PEN-2|PF10251.5|1.1e-28 S_Transcript_57550:68-493(+)
MERRSEAGGQEEPSLLPLRNPTPSTISSSSLRWPTIDGPLGLSEEESLTYARRFYKFGFLLLPWLWAVNCFYFWPVLRHSRSFPSFRPYVVRSAIGFTIFTVLLSSWALTFSIGGEHLFGPVWNKLVMYNVADELGLTGWM*

Click here to download the sequence:
Link to NCBI Protein BLAST