Transcript Information: S_Transcript_5771.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5212316959645
Replicate 24.0641980763843
Replicate 31.941340640379
Condition 2: 8 Hour
Replicate 11.2346278604656
Replicate 20.82422600251624
Replicate 30.78532070123616
Condition 3: 24 Hour
Replicate 11.83956913605
Replicate 22.1470979388119
Replicate 32.5222044405116


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5771.p2 GENE.S_Transcript_5771~~S_Transcript_5771.p2 ORF type:complete len:190 (+),score=35.08,UBN2_3|PF14244.2|1.1e-31 S_Transcript_5771:2373-2942(+)
ATGTCTTCTGAGGAGAACACTCAAAAACCACTTGAACCTACAGACCCTCTTTTTCTTCATCCCACAGATGGACCTAACTCTTTAAAGATAGATCCCACACTTACTGGTCCTGGAAATTTTAGGCCATGGAAAAGGCAAATGGAGATAGCCTTAGCCACCAAAAGAAAGCTTGGGTTTGTTACTGGTATTGTTAACAGATCTAAGGATGATGATGTTAAACAAGAGGCCTGGGACACATGTAAAAACATAGTCATCTCCTGGATTTTGAACAACATTAATGACAATATCAGAAGGTCTGTTATGTACATGGACACATCTAGGAACATTTGGGTGAATATGGAAACTAGGTTCACAGTAAGCAATGGGTCTAGGAAGTATAAGCTCAACAGGGACACTTATGAAGTTAAGCAAAACAAAAGGCCCCTCTCTTACTATTATATTGAGTTGAGTGTTATTTGGGAAGAGCTTGAGTCCATGAATGACTACCTTCCTATTACAAAGTTGACTGCTGAAATACATGCTTATATTAAGGCTATTAAGCTTCAAAAGGAGGAACAAAGGCTCTTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5771.p2 GENE.S_Transcript_5771~~S_Transcript_5771.p2 ORF type:complete len:190 (+),score=35.08,UBN2_3|PF14244.2|1.1e-31 S_Transcript_5771:2373-2942(+)
MSSEENTQKPLEPTDPLFLHPTDGPNSLKIDPTLTGPGNFRPWKRQMEIALATKRKLGFVTGIVNRSKDDDVKQEAWDTCKNIVISWILNNINDNIRRSVMYMDTSRNIWVNMETRFTVSNGSRKYKLNRDTYEVKQNKRPLSYYYIELSVIWEELESMNDYLPITKLTAEIHAYIKAIKLQKEEQRLF*

Click here to download the sequence:
Link to NCBI Protein BLAST