Transcript Information: S_Transcript_5776.p2


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value9E-17
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2062591697559
Replicate 23.5437641258184
Replicate 33.5356540678405
Condition 2: 8 Hour
Replicate 12.762356258696
Replicate 23.8252383684507
Replicate 33.9760130247634
Condition 3: 24 Hour
Replicate 13.5087636694737
Replicate 23.2880141147033
Replicate 33.6591567012604


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5776.p2 GENE.S_Transcript_5776~~S_Transcript_5776.p2 ORF type:complete len:193 (+),score=25.97 S_Transcript_5776:200-778(+)
ATGTCCGACCAACAAAGCCTAGACGATATGAAAAAAAATATGAGGGATGGTGACGAGGAAATGGAGTTTGTTACCATAGTTGTCGGTTTTATGGTGTTGGTAGTGGCAGCGTGGTATGACCAAAGGTATAGGGTGAATGAGATAACATGGGATGAAGAAGTACGTGCTAGAAAACGTGCCATGTGGATGGATTCTTTGATGAATGATAACATATGCAAGGAGCAATTACGACTTGATAGACATTGTTTTGAGAAGTTGTGTGCCATTTTACAATCCAAAGGGGGGTTGGTGACTTCAAGAAATGTTACGATTAGAGAAATTGTAGCCCTATTTTTACATTGTCTTGCTCACAACTTGAAGAATAGGACTATCAAGGCTATTTTTATTCGCTCAGGAGAGACTATTAGTCGCCAATTCCACACTGTGCTTCAAGCAGTTTTGAAGATTGGTAAATTTTATATGAAGCAAGTTGACTCTACAACTAGGTTTACAGGTGATAACAGATGGAAATGGTTTGAGGGGGTTGTTGGAGCACTTGATGGCACACATATTCATATGACAGTTCCCATTGGAGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5776.p2 GENE.S_Transcript_5776~~S_Transcript_5776.p2 ORF type:complete len:193 (+),score=25.97 S_Transcript_5776:200-778(+)
MSDQQSLDDMKKNMRDGDEEMEFVTIVVGFMVLVVAAWYDQRYRVNEITWDEEVRARKRAMWMDSLMNDNICKEQLRLDRHCFEKLCAILQSKGGLVTSRNVTIREIVALFLHCLAHNLKNRTIKAIFIRSGETISRQFHTVLQAVLKIGKFYMKQVDSTTRFTGDNRWKWFEGVVGALDGTHIHMTVPIGD*

Click here to download the sequence:
Link to NCBI Protein BLAST