Transcript Information: S_Transcript_5779.p2


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value3E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.4935868040152
Replicate 22.8141313211116
Replicate 31.5055294762123
Condition 2: 8 Hour
Replicate 12.6112722837306
Replicate 23.1959783771038
Replicate 31.3050518941825
Condition 3: 24 Hour
Replicate 11.7832557951505
Replicate 22.4282655260372
Replicate 31.5442068003132


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_5779.p2 GENE.S_Transcript_5779~~S_Transcript_5779.p2 ORF type:complete len:196 (+),score=14.82 S_Transcript_5779:200-787(+)
ATGTCCGACCAACAAAGCCTAGACGATATGAAAAAAAATATGAGGGATGGTGACGAGGAAATGGAGTTTGTTACCATAGTTGTCGGTTTTATGGTGTTGGTAGTGGCAGCGTGGTATGACCAAAGGTATAGGGTGAATGAGATAACATGGGATGAAGAAGTACGTGCTAGAAAACGTGCCATGTGGATGGATTCTTTGATGAATGATAACATATGCAAGGAGCAATTACGACTTGATAGACATTGTTTTGAGAAGTTGTGTGCCATTTTACAATCCAAAGGGGGGTTGGTGACTTCAAGAAATGTTACGATTAGAGAAATTGTAGCCCTATTTTTACATTGTCTTGCTCACAACTTGAAGAATAGGACTATCAAGGCTATTTTTATTCGCTCAGGAGAGACTATTAGTCGCCAATTCCACACTGTGCTTCAAGCAGTTTTGAAGATTGGTAAATTTTATATGAAGCAAGTTGACTCTACAACTAGGTTTACAGGTGATAACAGATGGAAATGGTTTGAGGTAAAGTCGTACAACCTAACTTTTGGAGAATTATTTGTTTATTATAAATACTTAATGCTAATGTCCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_5779.p2 GENE.S_Transcript_5779~~S_Transcript_5779.p2 ORF type:complete len:196 (+),score=14.82 S_Transcript_5779:200-787(+)
MSDQQSLDDMKKNMRDGDEEMEFVTIVVGFMVLVVAAWYDQRYRVNEITWDEEVRARKRAMWMDSLMNDNICKEQLRLDRHCFEKLCAILQSKGGLVTSRNVTIREIVALFLHCLAHNLKNRTIKAIFIRSGETISRQFHTVLQAVLKIGKFYMKQVDSTTRFTGDNRWKWFEVKSYNLTFGELFVYYKYLMLMS*

Click here to download the sequence:
Link to NCBI Protein BLAST