Transcript Information: S_Transcript_58120.p1


Annotated TAIR IDAT1G29900.1
Annotated Gene Namecarbamoyl phosphate synthetase B
Annotated Gene Symbol(s)CARB
Annotation TypeOrtholog
Chromosome Positionchr1:10468164-10471976 | Forward length=1187
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 138.35601615045
Replicate 239.276614377114
Replicate 349.076697541145
Condition 2: 8 Hour
Replicate 148.942041175838
Replicate 248.790675816141
Replicate 349.17239908199
Condition 3: 24 Hour
Replicate 131.225442081652
Replicate 223.985707602356
Replicate 320.105146131889


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_58120.p1 GENE.S_Transcript_58120~~S_Transcript_58120.p1 ORF type:complete len:1183 (+),score=303.70,CPSase_L_D2|PF02786.13|6.5e-72,CPSase_L_D2|PF02786.13|1e-36,CPSase_L_D3|PF02787.15|8.9e-39,ATP-grasp_4|PF13535.2|9.6e-16,ATP-grasp_4|PF13535.2|8.4e+03,ATP-grasp_4|PF13535.2|3.7e-20,MGS|PF02142.18|2.3e+03,MGS|PF02142.18|2.7e-17,ATPgrasp_Ter|PF15632.2|0.014,ATPgrasp_Ter|PF15632.2|0.2,ATPgrasp_Ter|PF15632.2|0.00089,Dala_Dala_lig_C|PF07478.9|0.0077,Dala_Dala_lig_C|PF07478.9|2.2e-06,ATP-grasp|PF02222.18|0.045,ATP-grasp|PF02222.18|2e-06,ATP-grasp_3|PF02655.10|0.029,ATP-grasp_3|PF02655.10|0.49 S_Transcript_58120:233-3781(+)
ATGGGTTTTTCGAACAAATTGATTTCATCTTCAATCTCAACCCCTAAACAACAACCCTACCTACCCAAATCAACCTTCTTTTCCTCTCATATTACTCTTTTCCACTACAAAAAATCCACCTTTGCTTCCCCATCTTCTCTAAACTTCAATTTCCACTCTTCTATCAAACGTTTATCGAAATCCCCTACATGGGCAACCGCCATTCGAAGCCAACATGGGGAGAAAGACAAGGCGGGTGCAACAACAACAGGTAAAAGGACTGATTTGAAGAAGATAATGATATTGGGTGCAGGCCCAATTGTGATAGGTCAAGCTTGTGAGTTTGATTATTCAGGTACTCAAGCTTGTAAAGCTTTGAAAGAAGAAGGGTATGAAGTTGTTTTGGTTAATTCTAATCCTGCTACTATTATGACTGATCCTGAATTAGCTGATAGAACTTATGTTACCCCCTTAACCCCTGATTTAGTGGAACAAATTTTAGAAAAGGAAAGACCTGATGCTTTATTGCCCACTATGGGTGGTCAAACTGCTTTGAATTTGGCTGTTGCTTTGGCTGAAAATGGGGCTTTGCAAAAATATGGGGTTGAGTTAATTGGGGCTAAACTTGATGCTATTAAGAAAGCTGAGGATAGGGAGTTGTTTAGGCAAGCAATGAAAAATATTGGGATTAAGACTCCACCTTCAGGTATTGGGAATACTATTGAAGAGTGTTTTGATATTGCTGCTCAGATTGGGGAGTTTCCCTTGATTATTAGGCCTGCTTTTACTCTTGGTGGTACAGGAGGGGGTATTGCTTATAATAAGGAGGAATTCGAGGCCATTTGTAAGTCGGGTTTGGCTGCTAGTTTGACCTCTCAAGTCTTGGTGGAGAAGTCTTTGTTGGGTTGGAAGGAGTATGAGCTTGAGGTCATGAGGGATTTAGCTGACAATGTGGTTATCATCTGTTCTATTGAGAATATTGATCCTATGGGGGTGCATACCGGGGATTCAATTACTGTGGCCCCTGCTCAGACCTTGACTGATAGGGAGTATCAACGCCTTAGGGATTACTCCATTGCTATCATCAGGGAGATTGGAGTTGAGTGTGGTGGTTCCAATGTTCAGTTTGCTGTCAATCCTAAAGATGGTGAGGTGATGGTTATTGAGATGAATCCTAGGGTGTCAAGATCATCTGCATTGGCTTCAAAAGCCACTGGTTTTCCCATAGCAAAGATGGCTGCGAAGTTGTCTGTTGGGTATTCATTGGATCAGATTCCCAATGACATTACTAGGAAAACTCCTGCCAGTTTTGAGCCTTCCATTGATTATGTGGTGACAAAGATTCCTCGATTTGCATTTGAGAAATTCCCTGGTTCTCAGCCATTGCTGACAACTCAGATGAAATCTGTTGGTGAGGCCATGGCTTTGGGTCGCACATTTCAGGAGTCCTTCCAAAAGGCAGTTAGATCTCTAGAGCTTGGTTACTCAGGTTGGGGCTGTGCAAAGATAAAGGAGTTGGATTGGGATTGGGACCAGTTAAAGTACAATCTCCGTGTTCCAAACCCTGATCGCATCCATGCTATTTATGCTGCAATGAAGAAAGGAATGAAAGTTGATGACATTCATGAGTTGAGTTTTGTAGATAAATGGTTTCTCAATCAACTCAAAGAACTGGTTGATGTGGAGCAATACCTTTTATCTCGGCAGCTGTCTGATCTGACAAAGGATGACTTTTATGAGCTAAAGAAAAGAGGCTTTAGTGATAAACAGATCGCCTTTGCAACTAAATCAACAGAAGGGGATGTTCGATCACAACGGTTGTCCTTCGGTGTCACTCCGGCTTATAAACGTGTTGATACCTGTGCTGCCGAATTTGAGGCGAATACACCTTACATGTATTCTTCTTATGATTTTGAGTGCGAATCATCTCCTACTCAAAAGAAAAAGGTTTTGATCCTTGGTGGTGGACCAAATCGTATTGGCCAGGGGATTGAGTTTGACTACTGCTGCTGCCATACATCATTTGCCCTTCAGGATGCTGGCTATGAGACCATCATGATGAACTCCAATCCAGAGACCGTATCGACAGATTACGACACAAGTGATCGGCTCTATTTTGAACCTCTTACAGTTGAAGATGTCCTGAATGTCATTGACCTTGAACGACCAGATGGCATCATTGTGCAGTTTGGTGGCCAAACACCCTTGAAACTGGCTTTGCCAATTCAGCAATATTTGGATAAACACAAGCCTATGAGTGCGAGTGGGGCAGGTCCGACTCGCATATGGGGAACATCTCCAGATTCCATTGATGCAGCCGAGGACAGAAAAAGGTTTAATGCCATCTTGGATGAATTAAAGATTGAACAGCCAAAGGGTGGCATTGCCAGGAGTGAAGCTGATGCTCTTGCAATTGCAGCGGACATAGGATACCCTGTTGTCGTGAGGCCTTCCTACGTCCTGGGTGGTAGGGCAATGGAGATTGTTTATAATGATGAAAAACTGGTGACTTATCTGGAGAATGCTGTTGAGGTGGATCCTGAGCGACCTGTTTTGATCGACAAATATCTGTCTGATGCTATTGAAATTGATGTTGATTGTTTGGCTGACTTGTATGGTAATGTGGTAATTGGTGGGATAATGGAGCACATTGAACAGGCTGGAGTCCATTCTGGTGATTCAGCTTGTTCACTGCCCACGAAAACTGTGTCATCTTCATGCTTAGAGACTATCAGGTCTTGGACAACAAAACTGGCAAAGCGTCTGAATGTGTGTGGGCTCATGAACTGTCAATATGCCATCACAGCATCTGGGGATATTTTCTTGTTGGAGGCTAACCCTCGTGCGTCACGTACAGTGCCATTCGTATCCAAGGCAATAGGCCACCCATTAGCTAAATATGCTTGCTTGGTGATGTCGGGGAAGTCTCTGGGTGATCTGAACTTTACCAAGGAGGTCATTCCTAAACATGTATCAGTCAAGGAAGCTGTCCTCCCATTTGAGAAATTCCCTGGTTGTGACATCTTGTTGGGCCCTGAGATGCGCAGTACTGGTGAAGTTATGGGTATTGCCTTTGATTTCTCATCATCCTTTGCCTTGGCTCAAATTGCTGCAGGGCAGAAGCTACCATTTTCCGGCACTGTGTTCCTAAGTTTGAATGACTTGACAAAGCCCCACCTTCCAGCAATCGCCCGTGCCTTCCTAGGGCTTGGATTCAATATCGTCTCTACTTCTGGGACTGCCCGTGTTCTTGAACTGGAAGGCATACCCGTTGAACGGGTGTTGAAGATGCATGAAGGGAGACCTCATGCAGGTGACATGGTTGCAAATGGGCAGATTCATTTAATGGTGATTACAAGCTCGGGTGATGCACTAGATCAGATAGATGGCCGGCAGCTGAGAAGGATGGCTCTTGCTTACAAGGTTCCTATCATAACAACAGTTGCTGGTGCTCTTGTAACAGCAGAGGCAATCAAAACCTTGAAGTCGAGCCCTGTTAAATTGTATGCTCTTCAGGACTTTTTCAAGGCAGAAAGTGGTGCTGCTAAGAGATTGCAATCTGTATCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_58120.p1 GENE.S_Transcript_58120~~S_Transcript_58120.p1 ORF type:complete len:1183 (+),score=303.70,CPSase_L_D2|PF02786.13|6.5e-72,CPSase_L_D2|PF02786.13|1e-36,CPSase_L_D3|PF02787.15|8.9e-39,ATP-grasp_4|PF13535.2|9.6e-16,ATP-grasp_4|PF13535.2|8.4e+03,ATP-grasp_4|PF13535.2|3.7e-20,MGS|PF02142.18|2.3e+03,MGS|PF02142.18|2.7e-17,ATPgrasp_Ter|PF15632.2|0.014,ATPgrasp_Ter|PF15632.2|0.2,ATPgrasp_Ter|PF15632.2|0.00089,Dala_Dala_lig_C|PF07478.9|0.0077,Dala_Dala_lig_C|PF07478.9|2.2e-06,ATP-grasp|PF02222.18|0.045,ATP-grasp|PF02222.18|2e-06,ATP-grasp_3|PF02655.10|0.029,ATP-grasp_3|PF02655.10|0.49 S_Transcript_58120:233-3781(+)
MGFSNKLISSSISTPKQQPYLPKSTFFSSHITLFHYKKSTFASPSSLNFNFHSSIKRLSKSPTWATAIRSQHGEKDKAGATTTGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYEVVLVNSNPATIMTDPELADRTYVTPLTPDLVEQILEKERPDALLPTMGGQTALNLAVALAENGALQKYGVELIGAKLDAIKKAEDRELFRQAMKNIGIKTPPSGIGNTIEECFDIAAQIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKSGLAASLTSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDREYQRLRDYSIAIIREIGVECGGSNVQFAVNPKDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYSLDQIPNDITRKTPASFEPSIDYVVTKIPRFAFEKFPGSQPLLTTQMKSVGEAMALGRTFQESFQKAVRSLELGYSGWGCAKIKELDWDWDQLKYNLRVPNPDRIHAIYAAMKKGMKVDDIHELSFVDKWFLNQLKELVDVEQYLLSRQLSDLTKDDFYELKKRGFSDKQIAFATKSTEGDVRSQRLSFGVTPAYKRVDTCAAEFEANTPYMYSSYDFECESSPTQKKKVLILGGGPNRIGQGIEFDYCCCHTSFALQDAGYETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVLNVIDLERPDGIIVQFGGQTPLKLALPIQQYLDKHKPMSASGAGPTRIWGTSPDSIDAAEDRKRFNAILDELKIEQPKGGIARSEADALAIAADIGYPVVVRPSYVLGGRAMEIVYNDEKLVTYLENAVEVDPERPVLIDKYLSDAIEIDVDCLADLYGNVVIGGIMEHIEQAGVHSGDSACSLPTKTVSSSCLETIRSWTTKLAKRLNVCGLMNCQYAITASGDIFLLEANPRASRTVPFVSKAIGHPLAKYACLVMSGKSLGDLNFTKEVIPKHVSVKEAVLPFEKFPGCDILLGPEMRSTGEVMGIAFDFSSSFALAQIAAGQKLPFSGTVFLSLNDLTKPHLPAIARAFLGLGFNIVSTSGTARVLELEGIPVERVLKMHEGRPHAGDMVANGQIHLMVITSSGDALDQIDGRQLRRMALAYKVPIITTVAGALVTAEAIKTLKSSPVKLYALQDFFKAESGAAKRLQSVS*

Click here to download the sequence:
Link to NCBI Protein BLAST