Transcript Information: S_Transcript_58279.p1


Annotated TAIR IDAT3G25680.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer Homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins in 355 species: Archae - 39; Bacteria - 284; Metazoa - 1081; Fungi - 166; Plants - 264; Viruses - 45; Other Eukaryotes - 575 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:9349693-9352258 | Forward length=558
E-Value5E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.2883880836574
Replicate 23.106542207811
Replicate 34.5046912847875
Condition 2: 8 Hour
Replicate 15.8215864371484
Replicate 26.2358313737169
Replicate 37.2277874062868
Condition 3: 24 Hour
Replicate 14.7079490281453
Replicate 25.4705752080838
Replicate 33.7688112329484


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_58279.p1 GENE.S_Transcript_58279~~S_Transcript_58279.p1 ORF type:complete len:348 (+),score=73.63 S_Transcript_58279:132-1175(+)
ATGTGCACTTCTTCATCTTCTTCATACTCTTCCTCTTTCTCTCTCCTCACCAATCGCCTCCCTCTCTCTCTTCATCACCATCACACCTTCCTCACCAATTCCCCTTTCTCTTTCCTATCCCGTCGTTCTCTCAAACTCTCCTCTCTCAATTCTTCATCTTCCACCTCCATTTCCAACAACAACGCCACCCTCGATCATCTCTCCTGGTCTTCTCTTAACGATGACGATGATCCCAATACCAGCAATTTCGCCGGTTGGGATTCTTCATCCACCCTAACCCCCTCCCCCATTAAACAATCAGGTTTTCCGAAGTTGCTGGTCGCTGGTATTGCCACGTCAGCCGCTCTTCTGGTCGCTGTGATTTCTTACTTCTCACTCTATAAAAACGGGTTCAGAGAGTCGATTAGAAGCTCAATTTCGGGTTCGTCGAACCAGCAAGTGACAGAAACTGAAGCACCTGCTGAATCTGATAAACATCAAACTAAGGAGGAGGGAAATGGAAATGGAATTGAAGGTGATGTGAGTGTCGACATCGAATTGAGTGATCCAGTTACTGAGACTCCTACTGCTTCTGAGAAGAATGTGCCTCGTGTCGTCACAGTTACAGTGGATTCCAATCAACAAGAAGCTGTGAATGTGCTGAAGAAATTGAAGATTATAGAGGAAGATGTTAAGGCTGGTGAGCTCTGTAGCCGGAGAGAATATGCAAGGTGGTTAGTTCGAGCAAGTTCGTTGTTGGAAAGGAACCCAAAACATAGGTTAACTCCTGCAGTTGCCCTCTCTGGATATTTCATCCCTGCATATGAGGATGTGACTACTGGAGACCAAGATTTTGACTCCATTCAAGCATTGGCAGAAGCTGGTGTTGTGTTGAGTAAACTATCACAAAAGTACTATTTACATGAAGGAGGCACAGATTTTTCTCCTGAAAGATTTATATCGCGGCGTGATCTCATAGATTGGAGAGCTCAGCTGGAGTATGATTTTTCCATGACAGGAAATCAAGAGGTAGAAAGATTTCAGAATATTGGTCAACTATTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_58279.p1 GENE.S_Transcript_58279~~S_Transcript_58279.p1 ORF type:complete len:348 (+),score=73.63 S_Transcript_58279:132-1175(+)
MCTSSSSSYSSSFSLLTNRLPLSLHHHHTFLTNSPFSFLSRRSLKLSSLNSSSSTSISNNNATLDHLSWSSLNDDDDPNTSNFAGWDSSSTLTPSPIKQSGFPKLLVAGIATSAALLVAVISYFSLYKNGFRESIRSSISGSSNQQVTETEAPAESDKHQTKEEGNGNGIEGDVSVDIELSDPVTETPTASEKNVPRVVTVTVDSNQQEAVNVLKKLKIIEEDVKAGELCSRREYARWLVRASSLLERNPKHRLTPAVALSGYFIPAYEDVTTGDQDFDSIQALAEAGVVLSKLSQKYYLHEGGTDFSPERFISRRDLIDWRAQLEYDFSMTGNQEVERFQNIGQLF*

Click here to download the sequence:
Link to NCBI Protein BLAST