Transcript Information: S_Transcript_58490.p1


Annotated TAIR IDAT1G30610.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)EMB88, EMB2279
Annotation TypeOrtholog
Chromosome Positionchr1:10846676-10850517 | Forward length=1006
E-Value1E-225
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 19.0944757780683
Replicate 210.149366499624
Replicate 311.009081232817
Condition 2: 8 Hour
Replicate 112.449543306716
Replicate 213.477017252847
Replicate 312.187154928587
Condition 3: 24 Hour
Replicate 18.3024913157023
Replicate 28.3903267391078
Replicate 38.1218850548786


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_58490.p1 GENE.S_Transcript_58490~~S_Transcript_58490.p1 ORF type:complete len:913 (+),score=191.97,PPR_2|PF13041.2|0.055,PPR_2|PF13041.2|67,PPR_2|PF13041.2|9.3e-06,PPR_2|PF13041.2|2.5,PPR_2|PF13041.2|0.032,PPR_2|PF13041.2|1.7e-10,PPR_2|PF13041.2|8.7e-12,PPR|PF01535.16|8.2e+02,PPR|PF01535.16|0.033,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|0.018,PPR|PF01535.16|20,PPR|PF01535.16|0.025,PPR|PF01535.16|99,PPR|PF01535.16|0.00017,PPR|PF01535.16|5.6e-07,PPR|PF01535.16|39,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|6.4,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.0059,PPR_3|PF13812.2|76,PPR_3|PF13812.2|25,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.0004,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|1e+02,PPR_1|PF12854.3|1.9e+03,PPR_1|PF12854.3|96,PPR_1|PF12854.3|13,PPR_1|PF12854.3|0.31,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|6.9e-06,PPR_1|PF12854.3|9.7e+02,TPR_19|PF14559.2|0.0051,TPR_19|PF14559.2|68,TPR_19|PF14559.2|33,TPR_14|PF13428.2|4.7e+03,TPR_14|PF13428.2|1.6e+03,TPR_14|PF13428.2|1.8e+02,TPR_14|PF13428.2|0.16,TPR_14|PF13428.2|1.4e+03,TPR_14|PF13428.2|1.1e+04,TPR_14|PF13428.2|1.9e+02,TPR_11|PF13414.2|1.9e+03,TPR_11|PF13414.2|35,TPR_11|PF13414.2|0.5,TPR_11|PF13414.2|0.11,TPR_11|PF13414.2|94,TPR_12|PF13424.2|4.1e+03,TPR_12|PF13424.2|2.1e+03,TPR_12|PF13424.2|16,TPR_12|PF13424.2|0.081,TPR_12|PF13424.2|5.5 S_Transcript_58490:267-3005(+)
ATGGGTTGCGTTTCAATGTCAATTGGGTTCACTCTTCAGAGACCTGCTTTTGGACTTGGTTTGAACCTGAGAAAAAAGAAGCAGGGTGCTTTGGTTTCTGTGTCGAGAAGACATAGTAAAGTAATAACCAACTCAGTGTCAACTAGACAAGTGGACAGCAATATTCTTTTAAAGGAGGACACTAAATTCAAGTCGTCATTTGATGAGTATTTGAAGGTGATGGAGTCTATTAGAGCTGAAAGGGACAAGAAGAAAGCTCAAAAAGGCAGTCATGGGCATAAAAATGAAGTTGCAGATGTTGCGTTGAGTAAAGATGCTCCACGGACTCAACAACATGGGAAAAACACTAATATTAAATGGTTGAAAGGGTCGGGCTCCAAGGCAAAAGATGACACACGCAGAGTATTGGGTAAAGATGCTCAATGGGCTCAGCAGTTTGGTAAAAGCACTAGTATTAAATCGTTTAAAGCGTCAGGCTCCAAGGAAAATGATGAACCACGCAGAGTGTCAAGTAAAGATGCTCCATGGGCTCGACAATCTGGTAAAAACAGGAATATTAAGTCATTTAAAGGGTCAGACTCCAAGGAAAATGATGAACCACACAGATTATCGAGTAAAGATGCTCCATGCGTTCAACAATGTGGTAAAAGCACTAATATTAAGCCGTTTAAAGGGTCAGGCTCCAAGGAAAATGATGAACCACGCAGAGTATTGAGTAAAGATGCTCCATGGGCTCAACAACATGGGAAAATCGCTAATATTAAGAGGTTTAAAGGACCAGGCTTCAAGGAAAAAGATGCGCCACGTGGAGTTGCAGGGAATGGCAGGTTCGGTGATAGTATTCAACCAAGAAACTCTATAAGAATTGACAGCCAGGCAAAGGTTGTCAAATTACAAGACAGTTCAAGTACAACATTACGTGTAGACTCTACTCCTGTTTCAATCCCTGAGCTTGTTGGTAACAAAAGACTGCCCAAGAGTGAGATAAGGACTGATGATGAGTTGGAGATGAAAAGTTTTCTCTTTGAAGAATCTGAACTACTTGGTGATGTTCAAGATGGTCCACGAGTTTCACGGATGGAAATGGAGGAAAGAATTCAGAAGCTTGCAAAAAGTTTAGATGATGCTGATATGGATATGCCAGAATGGATGTTTTCTAAGATAATGCGGAGTGCCCAGATCAGATTTTCTGATCATTCCATGCTGAGGGTTATTCAGATATTGGGTAAGCTTGGAAATTGGAGACGTGTACTGCAAGTAGTTGAGTGGCTTCAAATGCATGAGCGCTACAAATCCCTTAAAATCAGATATGTCTACACAGCTGCACTTGATGTACTTGGGAAGGCAAGACGTCCGGTGGAAGCATTAAATTTATTTTGTGCAATGCTGCGACACATGGACTTGTATCCTGACATTGTAGCTTATCATTCAATTGCTGTTACTCTTGGACAAGCTGGTCATATGAAGGAACTTTTTGATGTAATGGATAGCATGAGATGTATGCCTAAGCACTTTAAGGTTGAAGCTCTTGAGAATTGGGATCCACGGCTTGAACCGGATATTGTTGTTTACAATGCTGTCCTAAATGCTTGTGTGAAAAGAAAAGAATGGGAAGGAGCTATTTGGGTTCTGCAGAAACTGGCACAAGTGGGTCAACAGCCATCAAGCACTACATATGGACTTGCTATGGAGGTTATGTTGGCAAGTGGCAAGTACGACCTGGTTCATGAGTTTTTTAGGCAGATGCTGGAGTCTTCTGCGCCAAATGCTTTAGCATATAGAGTTCTTGTTAATACTCTTTGGAGAGAAGGTAAACCGGATGAGGCAATTGAAGCTGTTCAGGATATGGAAAGTCGGGGCATAATAGGTTCTGCCAGTCTTTATTATGACCTTGCTAGATGTCACTGTAGTTTCGGAAGGTGTGACGAGGCTTTGATGCAGGTTGACAAGATTTGTAAGGTTGCTAGTAAGCCTCTGGTGGTGACTTACACTGGTTTAATCCAAGCCTGTTTTGACCATGGAAATGTTGATGGTGCGACATCCATATTCAACCATATGCAGAAGTATTGCTCTCCGAATTTGGTGACCTATAACATCATGCTGAAAGCTTATCTTGAACACCGGATGTTTGATGAGGCAAAAGAGCTGTTTCAAAAGATGACACAGAGTGAGCGTGTAGGTAGTAAAGTCAAGGGCGGGATCACTCCAGATCTTCATACTTTTAGCTTGATGCTGGAAGCATGTATCAGAGAGGAAAAATGGGATGATTTTGAATATGCCTATGAGCAAATGTTGCACCATGCGCATCCTTTCAACACAAAACGCCATCTTTGGATGGTCTTGCAAGCTTCGGGTGCTGGAAAGGTTGAGGTGGTTGAAACAACATGGAGACAATTGATGCAAGCCAACCGTATTCCTCCACCAGCTCTCATCAAAGAAAGGCTCCGGTTGAAAATGGAGAAGGATGATTTAATGTCAGCAGTGTCCACCATCGCTTCCCATCCTCCCAGTCATCAGCAGTCGTTTTCCAGGGAGGCATGGTCGAAGTTATTCAAGAATAATGCACATTGCTTTAAGAAGGATGCTCTTAAACAGTTGATATATGAGGTCGAAACTCGTCTTTCCAAGAGCGAGTCGCCAAACCCCATATATCAGAATTTGCTTCAGTCTTGTATAGAATTTCTTAGGCTTGACAAATCATTTGGTGATAGAACAGACTTTATTGAAACTCCTGCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_58490.p1 GENE.S_Transcript_58490~~S_Transcript_58490.p1 ORF type:complete len:913 (+),score=191.97,PPR_2|PF13041.2|0.055,PPR_2|PF13041.2|67,PPR_2|PF13041.2|9.3e-06,PPR_2|PF13041.2|2.5,PPR_2|PF13041.2|0.032,PPR_2|PF13041.2|1.7e-10,PPR_2|PF13041.2|8.7e-12,PPR|PF01535.16|8.2e+02,PPR|PF01535.16|0.033,PPR|PF01535.16|1.4e+02,PPR|PF01535.16|0.018,PPR|PF01535.16|20,PPR|PF01535.16|0.025,PPR|PF01535.16|99,PPR|PF01535.16|0.00017,PPR|PF01535.16|5.6e-07,PPR|PF01535.16|39,PPR_3|PF13812.2|2.2e+02,PPR_3|PF13812.2|6.4,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.0059,PPR_3|PF13812.2|76,PPR_3|PF13812.2|25,PPR_3|PF13812.2|1.6e+04,PPR_3|PF13812.2|0.0004,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|1.4e+02,PPR_3|PF13812.2|1e+02,PPR_1|PF12854.3|1.9e+03,PPR_1|PF12854.3|96,PPR_1|PF12854.3|13,PPR_1|PF12854.3|0.31,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|0.0011,PPR_1|PF12854.3|6.9e-06,PPR_1|PF12854.3|9.7e+02,TPR_19|PF14559.2|0.0051,TPR_19|PF14559.2|68,TPR_19|PF14559.2|33,TPR_14|PF13428.2|4.7e+03,TPR_14|PF13428.2|1.6e+03,TPR_14|PF13428.2|1.8e+02,TPR_14|PF13428.2|0.16,TPR_14|PF13428.2|1.4e+03,TPR_14|PF13428.2|1.1e+04,TPR_14|PF13428.2|1.9e+02,TPR_11|PF13414.2|1.9e+03,TPR_11|PF13414.2|35,TPR_11|PF13414.2|0.5,TPR_11|PF13414.2|0.11,TPR_11|PF13414.2|94,TPR_12|PF13424.2|4.1e+03,TPR_12|PF13424.2|2.1e+03,TPR_12|PF13424.2|16,TPR_12|PF13424.2|0.081,TPR_12|PF13424.2|5.5 S_Transcript_58490:267-3005(+)
MGCVSMSIGFTLQRPAFGLGLNLRKKKQGALVSVSRRHSKVITNSVSTRQVDSNILLKEDTKFKSSFDEYLKVMESIRAERDKKKAQKGSHGHKNEVADVALSKDAPRTQQHGKNTNIKWLKGSGSKAKDDTRRVLGKDAQWAQQFGKSTSIKSFKASGSKENDEPRRVSSKDAPWARQSGKNRNIKSFKGSDSKENDEPHRLSSKDAPCVQQCGKSTNIKPFKGSGSKENDEPRRVLSKDAPWAQQHGKIANIKRFKGPGFKEKDAPRGVAGNGRFGDSIQPRNSIRIDSQAKVVKLQDSSSTTLRVDSTPVSIPELVGNKRLPKSEIRTDDELEMKSFLFEESELLGDVQDGPRVSRMEMEERIQKLAKSLDDADMDMPEWMFSKIMRSAQIRFSDHSMLRVIQILGKLGNWRRVLQVVEWLQMHERYKSLKIRYVYTAALDVLGKARRPVEALNLFCAMLRHMDLYPDIVAYHSIAVTLGQAGHMKELFDVMDSMRCMPKHFKVEALENWDPRLEPDIVVYNAVLNACVKRKEWEGAIWVLQKLAQVGQQPSSTTYGLAMEVMLASGKYDLVHEFFRQMLESSAPNALAYRVLVNTLWREGKPDEAIEAVQDMESRGIIGSASLYYDLARCHCSFGRCDEALMQVDKICKVASKPLVVTYTGLIQACFDHGNVDGATSIFNHMQKYCSPNLVTYNIMLKAYLEHRMFDEAKELFQKMTQSERVGSKVKGGITPDLHTFSLMLEACIREEKWDDFEYAYEQMLHHAHPFNTKRHLWMVLQASGAGKVEVVETTWRQLMQANRIPPPALIKERLRLKMEKDDLMSAVSTIASHPPSHQQSFSREAWSKLFKNNAHCFKKDALKQLIYEVETRLSKSESPNPIYQNLLQSCIEFLRLDKSFGDRTDFIETPA*

Click here to download the sequence:
Link to NCBI Protein BLAST