Transcript Information: S_Transcript_59272.p1


Annotated TAIR IDAT3G53170.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:19704600-19706417 | Reverse length=499
E-Value2E-195
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 122.262799110199
Replicate 230.548477848867
Replicate 329.650244934404
Condition 2: 8 Hour
Replicate 125.713499478543
Replicate 228.868289302416
Replicate 323.160488263105
Condition 3: 24 Hour
Replicate 131.507043496049
Replicate 233.64704334027
Replicate 333.855744220713


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_59272.p1 GENE.S_Transcript_59272~~S_Transcript_59272.p1 ORF type:complete len:520 (+),score=80.89,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|3.9e-09,PPR_2|PF13041.2|6.7e-09,PPR_2|PF13041.2|2.3e-08,PPR_2|PF13041.2|3.5e-07,PPR_2|PF13041.2|5.9e-12,PPR_2|PF13041.2|2.7e-09,PPR_2|PF13041.2|3.6,PPR|PF01535.16|6.5e+02,PPR|PF01535.16|0.26,PPR|PF01535.16|0.0022,PPR|PF01535.16|17,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|5.7,PPR|PF01535.16|6e-06,PPR|PF01535.16|2.7e-05,PPR|PF01535.16|0.16,PPR|PF01535.16|4.9e-05,PPR|PF01535.16|0.068,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|0.86,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|0.00031,PPR_3|PF13812.2|2.7e-05,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|0.037,PPR_3|PF13812.2|0.0089,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|84,PPR_1|PF12854.3|5.4e+03,PPR_1|PF12854.3|6.4e+02,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|0.029,PPR_1|PF12854.3|0.00043,PPR_1|PF12854.3|18,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|0.073,PPR_1|PF12854.3|0.54,PPR_1|PF12854.3|0.0024,ATP13|PF12921.3|0.00022,ATP13|PF12921.3|5.2e+02,ATP13|PF12921.3|9.3e+02,ATP13|PF12921.3|6.3e+02,ATP13|PF12921.3|94 S_Transcript_59272:134-1693(+)
ATGTTTGTGGCCAAAATCCACCCTCAAAATACCCAGAAATTCTCTGTCTCTCTCTCTCTCTTATCTTACTCTTATAAACAAAGAATTTGTATTAGGGTTCGAAAATCCGTTAATCGAACAGAGTTAATGGAGGCGGGGTTTGTGGGTTCAACTAATTTAGTGTCTTGTTGGTTATGGGTGAATGAAGAACAAGGAAAGAGAGCAAGAACTAAAAATGTGGTTTGTGATGGTGGTAGAATTCTAGCTAGAGGAGTTTCAGTACTAAAGGGAAATAGAAAGCAGACGAAAAAGGAGCTGTCAAGAATACTGTGGACTGAAGCAGCCATTGATAATATTGAGAGAAAAGCTGAGTCCACCAAGTATAGAAATTTGTGGCCTAAAGCTGTTCTTGAAGCTTTGGATGAGGCTATTCAGCTTTCCAAATGGGAGTCTGCCCTCAAGATATTTGGACTACTCCGCAAACAACATTGGTATAAGCCAAGATGCCAAACATACACTAAGCTTTTAATGATGCTTGGGAAATGTAGGAAAGCAGAACAGGCCACATTGCTTTTTGAGGTGATGCTTGCTGATGGCCTTCGCCCCACTCTTGATGTTTTTACTGCTTTGGTGTGTGCTTATGGCCTTTCTGGCCTCTTTGACCGAGCATTTTCTACCCTTGATGAAATGAAATCTGTTTATGACTGTAAACCTGATGTCCATACGTATTCCATACTCCTTAACTGCTGTGCAAAGCGCCAACGTTTTGATCTTGTCAATCCCATTCTTGCTGACATGTCATATCTGGGTGTACAATGCACTACCATTACATATAACACTGTAATTGATGGTTACAGCAAGGCCGGATTGTTCAAAATGATGGAAGATCTTTTGTCTGATATGATTCAAACTGTTGATTGTCATCCAGATGTTTTCACTTTGAATTCTTTCCTTTGGGCATATGGGACTCGCGGCCAAATTGAAACTATGGAGAGATGGTATCAAGAGTTTCAATTAATGGGGATAACCCCTGATGTTAGGACCTTTAACATCTTAATCAGGTCATATGGTAAAGTAGGCATGTATGATAAAATGGAGTCAGTTCTGGACTTCATGAAAAAAAGGTTCTTCTCCCCTACTGTTGTTACTTTCAATACAATTATTGATGTATTTGGACAGGCTGGTAATATACACAAGATGGATGAATATTTCCTGAAAATGAAGCATCAGGGAATGAAACCTAATTCCATCACCTACTGCTCTCTTGTTAGTGCTTATAGTAAGGCCAGGAAATTGTTTCGGGTGGATTCGATTCTTAGGCAAGTTGAAAACTCTGATGTTGTTGTAGATACTCCATTCTTTAATTGTGCTATCAGTGCCTATGGTCAGGCTGGCAATCTAGATAAAATGAGCGAGGTTTTCCTGGAAATGACGGATAAGAACTGCCAGCCCGATCATATAACCTTTGCTACCCTTATACAAGCTTACAATGCCAATGGAATGACAGAAGCTGCTAAAGACATACAGAATAAGATGTTATCCATGCAAAACTGCCCAGGACCTAAGCTGCTTCAATCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_59272.p1 GENE.S_Transcript_59272~~S_Transcript_59272.p1 ORF type:complete len:520 (+),score=80.89,PPR_2|PF13041.2|1.7e+02,PPR_2|PF13041.2|0.011,PPR_2|PF13041.2|3.9e-09,PPR_2|PF13041.2|6.7e-09,PPR_2|PF13041.2|2.3e-08,PPR_2|PF13041.2|3.5e-07,PPR_2|PF13041.2|5.9e-12,PPR_2|PF13041.2|2.7e-09,PPR_2|PF13041.2|3.6,PPR|PF01535.16|6.5e+02,PPR|PF01535.16|0.26,PPR|PF01535.16|0.0022,PPR|PF01535.16|17,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|5.7,PPR|PF01535.16|6e-06,PPR|PF01535.16|2.7e-05,PPR|PF01535.16|0.16,PPR|PF01535.16|4.9e-05,PPR|PF01535.16|0.068,PPR_3|PF13812.2|3.8e+03,PPR_3|PF13812.2|0.86,PPR_3|PF13812.2|0.0056,PPR_3|PF13812.2|0.00031,PPR_3|PF13812.2|2.7e-05,PPR_3|PF13812.2|3.2,PPR_3|PF13812.2|0.037,PPR_3|PF13812.2|0.0089,PPR_3|PF13812.2|12,PPR_3|PF13812.2|0.011,PPR_3|PF13812.2|84,PPR_1|PF12854.3|5.4e+03,PPR_1|PF12854.3|6.4e+02,PPR_1|PF12854.3|0.0013,PPR_1|PF12854.3|0.029,PPR_1|PF12854.3|0.00043,PPR_1|PF12854.3|18,PPR_1|PF12854.3|1e-05,PPR_1|PF12854.3|0.00011,PPR_1|PF12854.3|0.073,PPR_1|PF12854.3|0.54,PPR_1|PF12854.3|0.0024,ATP13|PF12921.3|0.00022,ATP13|PF12921.3|5.2e+02,ATP13|PF12921.3|9.3e+02,ATP13|PF12921.3|6.3e+02,ATP13|PF12921.3|94 S_Transcript_59272:134-1693(+)
MFVAKIHPQNTQKFSVSLSLLSYSYKQRICIRVRKSVNRTELMEAGFVGSTNLVSCWLWVNEEQGKRARTKNVVCDGGRILARGVSVLKGNRKQTKKELSRILWTEAAIDNIERKAESTKYRNLWPKAVLEALDEAIQLSKWESALKIFGLLRKQHWYKPRCQTYTKLLMMLGKCRKAEQATLLFEVMLADGLRPTLDVFTALVCAYGLSGLFDRAFSTLDEMKSVYDCKPDVHTYSILLNCCAKRQRFDLVNPILADMSYLGVQCTTITYNTVIDGYSKAGLFKMMEDLLSDMIQTVDCHPDVFTLNSFLWAYGTRGQIETMERWYQEFQLMGITPDVRTFNILIRSYGKVGMYDKMESVLDFMKKRFFSPTVVTFNTIIDVFGQAGNIHKMDEYFLKMKHQGMKPNSITYCSLVSAYSKARKLFRVDSILRQVENSDVVVDTPFFNCAISAYGQAGNLDKMSEVFLEMTDKNCQPDHITFATLIQAYNANGMTEAAKDIQNKMLSMQNCPGPKLLQS*

Click here to download the sequence:
Link to NCBI Protein BLAST