Transcript Information: S_Transcript_59405.p1


Annotated TAIR IDAT5G41190.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16487628-16490012 | Reverse length=602
E-Value7.4E-236
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.073053238334
Replicate 210.380419329293
Replicate 312.295157389067
Condition 2: 8 Hour
Replicate 114.386985812037
Replicate 214.272311731883
Replicate 314.414544472906
Condition 3: 24 Hour
Replicate 110.835340933931
Replicate 29.8679753753474
Replicate 38.5280277733407


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_59405.p1 GENE.S_Transcript_59405~~S_Transcript_59405.p1 ORF type:complete len:627 (+),score=162.92,NOB1_Zn_bind|PF08772.7|2.2e-21 S_Transcript_59405:175-2055(+)
ATGGAGGAATCAGAACCACCACCACCACCACCCAAACAACCAACATCATGTTGGTCAAACATAGTGAAGCAGCAAAACCCAGATCATAATAAACCCCCACTTGCCACCTCAACACCCACCCAACTTCTTCAAACCTGCAAATCCTCAAATGGTATTGCTTTAGCTGTTGTTGATGCCAATGCCATCATTCAAGGTGGTGAAAGACTCGCTTCTTTAGCTGATAAATTTGTTTCAATCTCTGAAGTTATCAGTGAAGTCCGTGACCCCACTTCTCGTCACAGGCTCTCTTTCCTCCCCTTCAATGTTGAGATTCTGGAACCTTCCCCCGAGTCACTTAAGAAAGTTATTAGCTTTGCAAGGGCAACCGGTGATCTGCAGACTCTTTCTGATGTTGATTTGAAGCTCATTGCTCTGGCTTACACATTGGAGGCTCAAATTCATGGCACTAATCACTTAAGAGATAACCCTCCACCTATACATGTCGTTAATGTTAGAAGGTTGCCTGAGAAGGAATTGCCAGGGTGGGGCAATAATGTACCTAACCTTGAAGAGTGGGAGGCTTTGGAAAATCTGGCTGAAAATGGTTCAGATCCGAATTCAAGAATTCTCCCTTTGAAAGATTTGAACTTGAATATTCCTGTTGAAGATCGTGCGAGTTTGGAAGAGGGCTCTGTTGGAAACGGTAGTGAAGGTCATGCGATGGACCATGATAGTACTGATCAGACTCCAAGGAGACACAGAAGATTTCCACCCAAAAAGAGAGAGGTAAAGATTGAAGGAAAAAAGATGGTTGCAGATGGGATTGATGCATCTCAAGGACAATGTGATGATGCCGGTGATTGGTTGCCTGCTGTTAGTCGAAGCACCCACAGAAGATATCTTAGGAGAAAGGCTCGCCGTGATATGTATGAGGCGTCATTAAAAGATGATGAACACCACGATGCTGTTGAGGATACTGAAGGGGAAGTTATCATGGAACCCGAGTGTCATGATCAGGTTTCTGAGGAAAATCATGTAGCTCTAGGAGCATCTGAAGAGGAAAATCATGTTGATAGGAGTCACGGGACAAGTAATGGCGAAGATATTTCAACTATTCTGCAGCAGATGAGACTTGAAGAGTATTCTTTGAAGGCTCAATTGGGAGAGGAAGAGCCAAACAATTCTCATTTAGGAGCTGAATCAATTGGCGCCTGCTTTGATGATGCACATTCAGTGGATGACAGAGATCAATGTGAAGTCAGTAATGAGGAATTAGATCAATTAGAGAATGGAAGTGTTGATAACTCATATGTAGAAGATGATGGAAGTGAACAGAGCTGGATGCTAAGATCTTTATCTGATTCATCTGTTGCTTGTATCACTGGAGACTTTGCTATGCAAAACGTTATCCTGCAAATGGGTTTACGTTTGTTGGCCCCTGGTGGAATGCAGATACGTGAGTTGCACAGGTGGGTACTGAAATGTCATGCTTGCAATAATGTAACTGCTGAAATCGGGCGAATCTTTTGTCCAAAGTGTGGAAATGGTGGTACCTTAAGAAAGGTAGCTGTCACTGTCGGTGAGAATGGGGTCGTGCTAGCAGCTCGTAGGCAGCGTATTTTTTTGAGAGGCACAAAGTTTTCACTACCCTTACCACAAGGAGGAAGAGATGCAGTAACCAAGAATCCCATTCTACGTGAAGACCAGCTCCCAAAGAAGTTCCTTTATCCCAAGACAAAGAAGAAGTCCAACAAGGACGATGATATCTTTTTGTCGAACGTTATCTTCAGCCACCACACTGACAAGAAAGCTCCCCATAGACCTCCTGTGAGACAAGCATTAGCAGTCTTTTCTGGAAAAAGAAACCCTAATGACAACCATTACTCTCGTAAGAAGCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_59405.p1 GENE.S_Transcript_59405~~S_Transcript_59405.p1 ORF type:complete len:627 (+),score=162.92,NOB1_Zn_bind|PF08772.7|2.2e-21 S_Transcript_59405:175-2055(+)
MEESEPPPPPPKQPTSCWSNIVKQQNPDHNKPPLATSTPTQLLQTCKSSNGIALAVVDANAIIQGGERLASLADKFVSISEVISEVRDPTSRHRLSFLPFNVEILEPSPESLKKVISFARATGDLQTLSDVDLKLIALAYTLEAQIHGTNHLRDNPPPIHVVNVRRLPEKELPGWGNNVPNLEEWEALENLAENGSDPNSRILPLKDLNLNIPVEDRASLEEGSVGNGSEGHAMDHDSTDQTPRRHRRFPPKKREVKIEGKKMVADGIDASQGQCDDAGDWLPAVSRSTHRRYLRRKARRDMYEASLKDDEHHDAVEDTEGEVIMEPECHDQVSEENHVALGASEEENHVDRSHGTSNGEDISTILQQMRLEEYSLKAQLGEEEPNNSHLGAESIGACFDDAHSVDDRDQCEVSNEELDQLENGSVDNSYVEDDGSEQSWMLRSLSDSSVACITGDFAMQNVILQMGLRLLAPGGMQIRELHRWVLKCHACNNVTAEIGRIFCPKCGNGGTLRKVAVTVGENGVVLAARRQRIFLRGTKFSLPLPQGGRDAVTKNPILREDQLPKKFLYPKTKKKSNKDDDIFLSNVIFSHHTDKKAPHRPPVRQALAVFSGKRNPNDNHYSRKKL*

Click here to download the sequence:
Link to NCBI Protein BLAST