Transcript Information: S_Transcript_59706.p1


Annotated TAIR IDAT3G19840.1
Annotated Gene Namepre-mRNA-processing protein 40C
Annotated Gene Symbol(s)ATPRP40C, PRP40C
Annotation TypeOrtholog
Chromosome Positionchr3:6891228-6897227 | Forward length=835
E-Value1.2E-287
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.93598388049
Replicate 210.664555047397
Replicate 311.214585361999
Condition 2: 8 Hour
Replicate 112.612879308708
Replicate 212.461279111677
Replicate 310.683239535988
Condition 3: 24 Hour
Replicate 110.40356090229
Replicate 29.2593244444935
Replicate 39.2261160056719


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_59706.p1 GENE.S_Transcript_59706~~S_Transcript_59706.p1 ORF type:complete len:842 (+),score=259.54,FF|PF01846.15|5.6e-13,FF|PF01846.15|4.1e-08,FF|PF01846.15|5.9e-15,FF|PF01846.15|4.2e-06,FF|PF01846.15|1.1e-05,WW|PF00397.22|1.6e-08,WW|PF00397.22|4.5e-06 S_Transcript_59706:217-2742(+)
ATGAATGCAGTAGCAAATGTGCCAAAAGATGCAGGTGCAGTGTCTTCATCTGGATTTCATACTACAGAAAATCCTCCACCAACTGTTTCACCCACATCTAATTTCAGCCAAGTGGCAACTTCAACCTCGACTTCTCCTTTGTTTGCATCAGTTCCTGGGTTGCCAGGGCTGGCTGCTTCACCTGCAGTCTCATCTGTGGCAATGAGTTCTTTATCTCCTGCAGGTTTTAGACCTGCTATGCCAGGACCTCCTCTTCCTTCTAACCTTGGTGTTCAACCACAATTATATCCTCCTCTGTACCCGACTATACCTCCTTCGTCTGGTGCGCCACCTCAAGTACCTTGGTTGCCACCCCCACAAATGGGTGGGACTGGGTTGAGACCTTTCATGACATATCCTCCCGTTTATCCTGGTCCTTTGGGTTTGGCACCACGTGGCGTGTCCCTTCCTTCTGTTCCTTTGCCTGAGGCTCAGCCTCCTGGCATTACACCTATAAGAAATCCTGGTGTAGTGCTCCCGTTGTCTGTTACAGCTGTTCCCATTTCGACACAAAGTTCTGGAATGCAGCCAGAAGTACCACCTCCTGGAACTGATGACAGTAAACAGGCTAGTGATGCTGGTACCAAGGGTGATACAGTGCAGAATGATCAATCAGATGCTTGGAGTGCCCATAGAACAGAAGCTGGGAGTGTATATTATTATAATGCTATAACTGGGCAATCAACATATGAGAAGCCTCCAGGTTTTAAGGGAGAGCCTGGAAAAGCAATGGCGCAACCAACTCCTGTTGCATGGGAGAAGGTGGGTGGCACTGATTGGGCCATGGTCACCACCAATGATGGGAAAAGATACTACTACAACACGAAAAGTCAGGTTAGCAGCTGGCAAGTCCCCATAGAGGTAGCAAAATTGAGGAATAAGCAGGAAAATGACTATTTGAAAGAGAACTCAAGTTCAGTGCCAAATGTGACCATTTTGAATGATAAAGGATCTGGTGCTACTAGTTTAAGTGCTCCTGCTCTCAACACAGGTGGTCGTGATGCAATAGCTCTCAGAAACTCAGGTGCTCTGGGATCCTCATCTGCTCTTGATTTGATTAAAAAGAAGCTACAAGAATCTGGAGCTCAGGTTACCTCTTCTCTAATTCCTGCTTCGTCAGGATCAGCATTGTTAGAAACTAATGGAACTAAAACGGTTGAGGCTACAGCCAAGGGCTTGCAGAGTGAGGGCAGCAAGGATAAGCCTAAAGATGCTGAAGGAGATGGCAATGTATCTGACTCGTCTTCAGATTCAGAGGATGAGGACCCAGGACCAACCAAGGAGGAGCGTATTATTCAGTTCAAGGAGATGCTTAAAGAACGTGGAGTGGCTCCATTTTCAAAATGGGACAAGGAGCTGCCAAAGATTGTGTTTGATCCTCGATTCAAGGCAATCCCTACTTATGCAGAGCGTCGTTCATTGTTTGAGCATTATGTTCGTACGAGGGCTGAAGAGGAACGCAAAGAAAAACGAGCAGCTCAAAAGGCTGCAGTTGAGGGTTTTAAGCAGCTGTTAGATGAAGCAAAGGAGGATATTAATCATAGTACTGATTACCACACATTTAGGAAGAAATGGGGTCATGATCCTCGATTTGAGGCCTTGGACCGCAAGGATCGAGAGGCTCTGCTGAATGAGAGGGTTCTTTCACTGAAGAGGGCTGCTGAAGAAAAAGCTCAAGCTGAGCGTGCCGCTGCTGCCTCTAATTTCAAGACCTTGCTCCGAGAAAAAGGGGATATAAGTGCTAATTCTCGTTGGTCCAAGGTGAAAGACAGCCTTAGGGATGATGCCAGGTATAAAGCTGTCAAGCACGAAGAGAGAGAGGCATTATTTAATGAATATGTATCTGAGTTAAAGGCGGCAGATGGTGAAGCAGAGAGAGCCTCAAAGGCCAAGAGGGAGGAACAGGAGAAGTTGAAAGAGAGAGAGAGAGAGCTGCGAAAGAGGAAAGAAAGAGAGGAACAGGAGATGGAGAGAGTACGGTTGAAAGTTCGTAGGAAAGAAGCAGTTGCTTCTTATCAAGCATTACTAGTGGAAACAATAAAAGATCCTCAGGCATCTTGGACAGAGTCAAAGCCTAAACTTGAGAAAGATCCACAAGGGCGTGCATCCAATCCTGATCTGGATGGAGCTGACTTGGAGAAGCTCTTTCGAGAACATGTGAAAATGCTCTATGAGAGGTGCGCTCATGAGTTCAGAACTCTCTTGACAGAGGTTATAACTCTTGAAGCAGCTATTAAAGAGACTGAAGATGGGAAAACAGCTCGTAATTCATGGTCTACAGCCAAAAGGCTCCTGAAATCTGATCCTAGGTATACAAAAATGCCTAGAAAAGATAGAGAAGCCCTCTGGAAGAGGTATGCTGAGGAAATACAGCGCAAGCAAAAGGCAACTTCTGAGCAAAAGGGAGACAAGCATCATGAATCCATTAAAAATAGAAGTTCCAATGATCCTGGTCGGCTTGCAAGAAGTACACAGGAGAGGAGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_59706.p1 GENE.S_Transcript_59706~~S_Transcript_59706.p1 ORF type:complete len:842 (+),score=259.54,FF|PF01846.15|5.6e-13,FF|PF01846.15|4.1e-08,FF|PF01846.15|5.9e-15,FF|PF01846.15|4.2e-06,FF|PF01846.15|1.1e-05,WW|PF00397.22|1.6e-08,WW|PF00397.22|4.5e-06 S_Transcript_59706:217-2742(+)
MNAVANVPKDAGAVSSSGFHTTENPPPTVSPTSNFSQVATSTSTSPLFASVPGLPGLAASPAVSSVAMSSLSPAGFRPAMPGPPLPSNLGVQPQLYPPLYPTIPPSSGAPPQVPWLPPPQMGGTGLRPFMTYPPVYPGPLGLAPRGVSLPSVPLPEAQPPGITPIRNPGVVLPLSVTAVPISTQSSGMQPEVPPPGTDDSKQASDAGTKGDTVQNDQSDAWSAHRTEAGSVYYYNAITGQSTYEKPPGFKGEPGKAMAQPTPVAWEKVGGTDWAMVTTNDGKRYYYNTKSQVSSWQVPIEVAKLRNKQENDYLKENSSSVPNVTILNDKGSGATSLSAPALNTGGRDAIALRNSGALGSSSALDLIKKKLQESGAQVTSSLIPASSGSALLETNGTKTVEATAKGLQSEGSKDKPKDAEGDGNVSDSSSDSEDEDPGPTKEERIIQFKEMLKERGVAPFSKWDKELPKIVFDPRFKAIPTYAERRSLFEHYVRTRAEEERKEKRAAQKAAVEGFKQLLDEAKEDINHSTDYHTFRKKWGHDPRFEALDRKDREALLNERVLSLKRAAEEKAQAERAAAASNFKTLLREKGDISANSRWSKVKDSLRDDARYKAVKHEEREALFNEYVSELKAADGEAERASKAKREEQEKLKERERELRKRKEREEQEMERVRLKVRRKEAVASYQALLVETIKDPQASWTESKPKLEKDPQGRASNPDLDGADLEKLFREHVKMLYERCAHEFRTLLTEVITLEAAIKETEDGKTARNSWSTAKRLLKSDPRYTKMPRKDREALWKRYAEEIQRKQKATSEQKGDKHHESIKNRSSNDPGRLARSTQERR*

Click here to download the sequence:
Link to NCBI Protein BLAST