Transcript Information: S_Transcript_60275.p1


Annotated TAIR IDAT2G05160.1
Annotated Gene NameCCCH-type zinc fingerfamily protein with RNA-binding domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:1859011-1860931 | Reverse length=536
E-Value1.8E-133
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 149.54187115183
Replicate 261.285526548652
Replicate 362.88670664572
Condition 2: 8 Hour
Replicate 162.616628763604
Replicate 269.438306160463
Replicate 353.85260587998
Condition 3: 24 Hour
Replicate 167.365005008335
Replicate 243.841471573918
Replicate 352.83306205079


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_60275.p1 GENE.S_Transcript_60275~~S_Transcript_60275.p1 ORF type:complete len:549 (-),score=93.17,OST-HTH|PF12872.3|8.5e+03,OST-HTH|PF12872.3|1.1e-11,RRM_5|PF13893.2|4.4e+03,RRM_5|PF13893.2|1.2e-07,RRM_1|PF00076.18|8e-08,RRM_6|PF14259.2|4.5e-07 S_Transcript_60275:293-1939(-)
ATGGATTTATCCGACGCAACAAATATTCTGGTAGATAGGATTGCAAAGTTGGAACCCTTAGATGTAGCCCAAAAAATAACAGGAATTTTGCTATTACAAGACCATGGGGAAAGGGAAATGATAAGGCTAGTTTATGCTCCTGAAAAACTCTTGGAAAATTTGGTGAATAGAATCAAAGTTCAACTAGAATATATCTCCAATAGCCAAGTTTCGAGTTCCATGTCAGACTTGAGTTATGCCCCCTTTTCACCCAATGGGTGTCGACCCTACTCGTCTCCATCCTCGTTTAGGTTCTCAGTACCGAATTACTGGGACCCACAGCTGCCACCAGAGCAGCAAGCGGTTCTGAGTTCCGAATTTGCTTCAAGGTATGGGGATTCGGCTGTGGAGGATTTCCGGATCCAGAATCAAGCCCAGTTTGCAGCATATGAGGATCCATTGGATCCTCTTGGTGCCGGGGCAAGGGGTCATTTGAGGGATATTTACTACCAGAGTCGTCGCTCACCAAGTTTGTCTGACCTCTCCATGAAGACCTGCCATTATTTCAACAAAGGGTTTTGCAAACATGGCAGTAGCTGCCGGTATTTGCATGGGCCGGACAATATGAGTTCGATTAATTTCACAGAATATGGTGGGGATGATCACATGTTCTCACCTGTATCACTGGAAAAACTCGAGCTTGAGATAACCGAGCTCTTGAAATTGAGGAGGGGAAGTCCTGTCTCCATTGCTTCCCTTCCCATGTTGTATCTTGAGAAGTATGGAAAGAACATTCAAGCCGAGGGTTACCTTACTGAGAGCCAAAGGCATGGGAGGGCTGGTTATAGCTTGACGAAACTTCTTGCTAGGTTGAAGAGCATTCGGCTAATTGATAGGCCACATGGACAACATTCTGTGATCTTAGCTGAAGATGCTGCTAAATACAACCTAGAATATAGAAATGAAAGGAATGATCCTGGCCCTATCGTCAGTGGGTCTCGTCAGATATACTTAACTTTTCCAGCTGAGAGTGGATTCTCTGAAGATGATGTGTCCAAATACTTCAGCACTTTTGGTCCTGTGGAAGATGTCAGGATACCCTGCCAACAAAAGCGGATGTTTGGATTTGTAACTTTTGCAAGTTCTAATACTGTGCGAACTGTCTTGGCAAAAGGGAATCCCCATTTTGTTTGTGGCTCTCGCGTTCTTGTTAAACCTTATAGGGAAAAGTCGAAGCTTGTCGAGAGGAAATACATGGAGAAAAATGATCATGGTATGTACTACCCTGGAAATTACTTGGACCTAGAACCTGACTTCCATCCATTGCCTAGATTTGAACCTCCTAGGGTTTTGATGAGGAGGCAACTGGAAGAGCAGGAGGCAAAGACTCTGGAAATGAGGAGGCACCTTTCAGAATTGCATCTAGGACGTAAACGTATTCACAATCAACAATATCTCGACTATGATGAGCTGCATGCTTCAGAAGATGAAATCAATTATCTGCTCGGTTTTATCAATAACATCTCCATAAGTGACAATAGATCAAAGCATCCTGGAACTGATTTCATTGATCAAGAGAGGTATCTGTTCGATTTGCAAGTCTTGTTTAGTTCATGTTTGCTTTCGAGTTTCAACTTTCATTTTCTCTTTCTTTTTCCGGAGTTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_60275.p1 GENE.S_Transcript_60275~~S_Transcript_60275.p1 ORF type:complete len:549 (-),score=93.17,OST-HTH|PF12872.3|8.5e+03,OST-HTH|PF12872.3|1.1e-11,RRM_5|PF13893.2|4.4e+03,RRM_5|PF13893.2|1.2e-07,RRM_1|PF00076.18|8e-08,RRM_6|PF14259.2|4.5e-07 S_Transcript_60275:293-1939(-)
MDLSDATNILVDRIAKLEPLDVAQKITGILLLQDHGEREMIRLVYAPEKLLENLVNRIKVQLEYISNSQVSSSMSDLSYAPFSPNGCRPYSSPSSFRFSVPNYWDPQLPPEQQAVLSSEFASRYGDSAVEDFRIQNQAQFAAYEDPLDPLGAGARGHLRDIYYQSRRSPSLSDLSMKTCHYFNKGFCKHGSSCRYLHGPDNMSSINFTEYGGDDHMFSPVSLEKLELEITELLKLRRGSPVSIASLPMLYLEKYGKNIQAEGYLTESQRHGRAGYSLTKLLARLKSIRLIDRPHGQHSVILAEDAAKYNLEYRNERNDPGPIVSGSRQIYLTFPAESGFSEDDVSKYFSTFGPVEDVRIPCQQKRMFGFVTFASSNTVRTVLAKGNPHFVCGSRVLVKPYREKSKLVERKYMEKNDHGMYYPGNYLDLEPDFHPLPRFEPPRVLMRRQLEEQEAKTLEMRRHLSELHLGRKRIHNQQYLDYDELHASEDEINYLLGFINNISISDNRSKHPGTDFIDQERYLFDLQVLFSSCLLSSFNFHFLFLFPEL*

Click here to download the sequence:
Link to NCBI Protein BLAST