Transcript Information: S_Transcript_60356.p1


Annotated TAIR IDAT4G38350.2
Annotated Gene NamePatched family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:17958324-17966846 | Reverse length=1297
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.145352025406
Replicate 213.104580340426
Replicate 311.703221157459
Condition 2: 8 Hour
Replicate 137.282323907099
Replicate 238.514876312476
Replicate 342.236041426111
Condition 3: 24 Hour
Replicate 116.979201785033
Replicate 215.302016632754
Replicate 317.497427557145


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_60356.p1 GENE.S_Transcript_60356~~S_Transcript_60356.p1 ORF type:3prime_partial len:862 (+),score=139.55,NPC1_N|PF16414.1|6.1e-66,Patched|PF02460.14|44,Patched|PF02460.14|4.4e-51,Sterol-sensing|PF12349.4|4.8e-49,Sterol-sensing|PF12349.4|9.9e+03 S_Transcript_60356:411-2993(+)
ATGAAGTCTTTACTGAGATTTTTTCTTGTCCTTCTTGTGATTCAGGTGGGTTCTTTGTGTAGTGCAGTAAAAGATGATCATGGGCCATCTCAATATTCTGATCCCTTACTTGGGCAAAGACATGCTGTGGAATACTGTGCTATGTATGATATCTGTGGAGAGCGTAGTGATGGGAAAGTTTTAAATTGCCCCTACGGTTCTCCTTCAGTGAAGCCTGATGATCTCTTTTCAGCAAAAATACAGAGTTTGTGTCCCACCATTAGTGGTAATGTGTGTTGTACAGAGACCCAGTTTGAGACATTGCGCACACAAGTTCAACAAGCAGTCCCATTGCTGGTTGGTTGTCCAGCTTGCTTGAGGAACTTCCTAAATCTTTTCTGTGAGATGTCTTGCTCACCAAATCAGAGTCTGTTCATTAATGTTACTTCTGTTGCCAAGGTCAATGGCAACTTGACTGTGGATGGTATTGATCTTTTTGTCACAGAAGAATTTGGAGAAGGACTCTATAACTCCTGCAAGGATGTCAAATTTGGAACTATGAATACGAGAGCCATAGATTTTATGGGGGCAGGCGCCAAGAATTATAAAGAATTGTTCGCATTCCTTGGCCAGAAGGCAATACCAGGCTTGCCTGGATCCCCCTATACCATTAATTTCCAGACATTTAGTCCTGAATCATCTGGAATGAATCTTATGAACGTTTCTACATACTCCTGCAATGACACTTCACTAGGTTGCTCATGTGGTGATTGTCCTTCATCTCCTGAGTGCTCGAGCTCAGAACCTCCCCATTCACAGACAAAAGAGTCCTGCTCAGTTACACTGGGATCACTCAAGATAAAATGTGTTGATTTTTCAATGGCCATCTTGTATATTCTACTGCTTTCTGGATTTCTTGGATGGGGGTTCTTTCATCGAGCTGCAGTAAGGAGTGGTCCTTCATCTAGCACAGAACCGTTGTTGAGTAAAGCTAACAATACCAATGAGGAAATTGATGATCACCTTGGGCAAAAGGTTCCTGAGTCACTACCTCAAGCCGAGTCTACTATTCAAGGATGTATGACTAATGCTTTTAGGAGATATGGGCTATGGGTTGCAAGAAATCCTACTCTTGTGCTGTGCTCCTCTGTCGGCATTGTTATTGTCCTTTGCTTAGGTTTGTTGTGGTTCAAGGTTGAGACTCGACCTGAGAAGTTGTGGGTAGGTCCTGGAAGTAAAGCAGCAGAAGAGAAACACTTTTTTGACAGCCACTTAGCCCCATTTTATAGGATTGAGCAGATTATATTGGCAACCAGGCCAGATTTGCAGAATGAGAAACCTCCCAGTATAGTAACAGAGGATAATATACAGTTACTCTTTGATATACAAGATAAGGTTGATGAACTTCGTGTAAATTATTCAGGATCCATGGTGTCTCTAGCTGACATTTGTTTGAAGCCTTTAGGGGAGGATTGTGCCATCCAGAGTATCCTTCAGTATTTTCAGATGGATCCTTACAATTATGATGATTATGGAGGACTAGAGCATGCTTTGTATTGCTTTCAGCATTACACTTCCACTGATAAGTGTTTGAGCGCCTTTAAGGCCCCACTTGATCCAAGTACTGCATTAGGGGGATTCCCTGGGAACAATTTTTCTGAGGCTACAGCATTTGTTGTAACCTACCCAGTCAATAATGTGATTGATGAATCAAGTGAAGCAAGCAGGATGGTTGTGGAGTGGGAAAGGGCTTTCATTAAGTTGGCCAAGGAACAACTGTTGCCAATGGTGCAGTCTAGCAATCTGACATTATCTTTCTCTTCTGAAAGCTCAATTGAGGATGAACTAAAACGTGAAAGCTATGCAGATGTCATAACCATTTTAATAAGCTATCTTGTGATGTTTGCTTACATATCAATTACGCTGGGAGACAGGCCTCATTTATCTTCCTTTTACATTTCCTCTAAGGTGTTACTCGGTCTATCAGGAGTTGTGGTTGTTATACTGTCGGTCCTTGGGTCAGTTGGCTTCTTCAGTGCTTTTGGAGTGAAATCTACATTAATAATCATGGAAGTCATTCCTTTCCTTGTTCTGGCTGTTGGAGTAGACAACATGTGCATATTAGTACATGCTGCAAAACGGCAGCCAGTTGAAATTCCTCTGGAAGAACGAATAAGCAATGCCCTTGCTGAAGTTGGTCCATCTATAACACTTGCTAGTTTGTCAGAGGTTCTCGCATTTGCCGTAGGAGCTTTCATCACTATGCCAGCATGTCGTGTCTTCTCGATGTTTGCAGCTATGGCAGTCCTGCTGGACTTCCTTCTTCAACTTAGTGCTTTTGTTGCACTGATAGTGTTGGACTTCAAAAGGGCTGAAAATTACAGGATTGACTGTTTCCCATGCATTAAAATCTCTTCGTCTTCTGTGGCTTCAGGAATTGATCAGAGAAGTCCGGGATTGCTTACTCGATATATGAAGGAAGTTCATGCACCCATACTTGTAATTCGGGGAGTTAAAGTTGTTGTCCTTGCTCTATTTGCTGGATTTACTTTAGCAAGCATTGCATTATGCCCAAGGATCGAGCCAGGCTTAGAGCAGCAGATT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_60356.p1 GENE.S_Transcript_60356~~S_Transcript_60356.p1 ORF type:3prime_partial len:862 (+),score=139.55,NPC1_N|PF16414.1|6.1e-66,Patched|PF02460.14|44,Patched|PF02460.14|4.4e-51,Sterol-sensing|PF12349.4|4.8e-49,Sterol-sensing|PF12349.4|9.9e+03 S_Transcript_60356:411-2993(+)
MKSLLRFFLVLLVIQVGSLCSAVKDDHGPSQYSDPLLGQRHAVEYCAMYDICGERSDGKVLNCPYGSPSVKPDDLFSAKIQSLCPTISGNVCCTETQFETLRTQVQQAVPLLVGCPACLRNFLNLFCEMSCSPNQSLFINVTSVAKVNGNLTVDGIDLFVTEEFGEGLYNSCKDVKFGTMNTRAIDFMGAGAKNYKELFAFLGQKAIPGLPGSPYTINFQTFSPESSGMNLMNVSTYSCNDTSLGCSCGDCPSSPECSSSEPPHSQTKESCSVTLGSLKIKCVDFSMAILYILLLSGFLGWGFFHRAAVRSGPSSSTEPLLSKANNTNEEIDDHLGQKVPESLPQAESTIQGCMTNAFRRYGLWVARNPTLVLCSSVGIVIVLCLGLLWFKVETRPEKLWVGPGSKAAEEKHFFDSHLAPFYRIEQIILATRPDLQNEKPPSIVTEDNIQLLFDIQDKVDELRVNYSGSMVSLADICLKPLGEDCAIQSILQYFQMDPYNYDDYGGLEHALYCFQHYTSTDKCLSAFKAPLDPSTALGGFPGNNFSEATAFVVTYPVNNVIDESSEASRMVVEWERAFIKLAKEQLLPMVQSSNLTLSFSSESSIEDELKRESYADVITILISYLVMFAYISITLGDRPHLSSFYISSKVLLGLSGVVVVILSVLGSVGFFSAFGVKSTLIIMEVIPFLVLAVGVDNMCILVHAAKRQPVEIPLEERISNALAEVGPSITLASLSEVLAFAVGAFITMPACRVFSMFAAMAVLLDFLLQLSAFVALIVLDFKRAENYRIDCFPCIKISSSSVASGIDQRSPGLLTRYMKEVHAPILVIRGVKVVVLALFAGFTLASIALCPRIEPGLEQQI

Click here to download the sequence:
Link to NCBI Protein BLAST