Transcript Information: S_Transcript_60669.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1099821951166
Replicate 22.2006362985756
Replicate 32.3112380258221
Condition 2: 8 Hour
Replicate 16.8721206648562
Replicate 26.0650024445295
Replicate 38.2319513768598
Condition 3: 24 Hour
Replicate 13.1845482326442
Replicate 22.434475923802
Replicate 33.4833514012181


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_60669.p1 GENE.S_Transcript_60669~~S_Transcript_60669.p1 ORF type:3prime_partial len:391 (+),score=80.01,UBN2_3|PF14244.2|4.1e-38,Retrotrans_gag|PF03732.13|9.1e-07 S_Transcript_60669:642-1811(+)
ATGTCAGGGAGAAACAATATGCAGTACTGTGATCCACTTTTCTTGCATCCTTCAGATGGTCCTTCGTCTATTTCTGTTGAGGAGAAACTAATTGGAGCTGTAAATTACAGATCGTGGAAACGAAATATGGAGATTGCGTTGGCTACAAAGAGAAAATTGGGATTCATAAAAGGAACTGTTACAAGAGTTGATGATGATCCTACCAAGGCAGATCAATGGGACACCTGTAATAGCATGGTAATTGCTTGGCTTCTAAACTCAATGTCTGATTCTGTGAGGCGTTCTGTATTATACATTGATTCTGCATGTGGTATGTGGATACATCTTGAAAATAGGTTTTCTGTGAGTAATGGCTCAAGAAAGTACAAAATCAATAAGGAAATATATGACTTGAGACAAAATGGAACCAATATAAATGAGTTCTATACTAAGATGAGATGTCTTTGGGAAGAATTGGATTCCATGAGTACTTTGCCTAAGATAACTGAGTTCACTGAAGAAATTATAGTGTTCTTAAAGGCTTTGGATAAAGAAAAAGAGGAACATAGGTTGTTTCAATTTCTAAATGGTCTGGATAATGTTTACAACATTCAAAGGAGCAATCTGCTATTCATGAATCCTCTGCCATCTGTAGAAATGGCATGTTCTAATCTTCAGCAAGAGGAGACTCAAAGGGATGTGCTAAATATTGTTGTGCCTGAAGTTGAATCTTCAGCTCTCTTTAGTAAGGGGGAGAATTCTTTTAAGTGCACTGGATGTGGTAGAACTGGTCACACAAGAGATAGATGCTGGTCTGAGCATGGGTATCCCTCTTGGCATCCTTTGGCCAAAAAGTTTCCACAAAAATCAAGAGGAAAAGATACCTACTCGAGCTCTGGTGCTAAAGGACCTCAAAATTGGAATAGATTCACTGTGCATAAACCTAAACCACAGAATTGGAACCAACAGTCTGCTAATAATGTTCTTACATCAGACAGTACAACTTCTGCTGTATCTGGACCTGTTTTCACTCAACAGCAACTTGATCATATCATGAAACTCTTGCCTAGCACATCCAGAAATGGAAAGTCTTCTTCAGATACTGATGATGAAGTGGATACTGGCTTTGCAGGTATGTTGTATTGCCATAGCGCAGCTACATTTGCTAATGAATGGATTCTTGATTCTGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_60669.p1 GENE.S_Transcript_60669~~S_Transcript_60669.p1 ORF type:3prime_partial len:391 (+),score=80.01,UBN2_3|PF14244.2|4.1e-38,Retrotrans_gag|PF03732.13|9.1e-07 S_Transcript_60669:642-1811(+)
MSGRNNMQYCDPLFLHPSDGPSSISVEEKLIGAVNYRSWKRNMEIALATKRKLGFIKGTVTRVDDDPTKADQWDTCNSMVIAWLLNSMSDSVRRSVLYIDSACGMWIHLENRFSVSNGSRKYKINKEIYDLRQNGTNINEFYTKMRCLWEELDSMSTLPKITEFTEEIIVFLKALDKEKEEHRLFQFLNGLDNVYNIQRSNLLFMNPLPSVEMACSNLQQEETQRDVLNIVVPEVESSALFSKGENSFKCTGCGRTGHTRDRCWSEHGYPSWHPLAKKFPQKSRGKDTYSSSGAKGPQNWNRFTVHKPKPQNWNQQSANNVLTSDSTTSAVSGPVFTQQQLDHIMKLLPSTSRNGKSSSDTDDEVDTGFAGMLYCHSAATFANEWILDSG

Click here to download the sequence:
Link to NCBI Protein BLAST