Transcript Information: S_Transcript_60671.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.92836050820397
Replicate 21.0261762584891
Replicate 30.53612604894188
Condition 2: 8 Hour
Replicate 16.1992413712596
Replicate 25.8530999348122
Replicate 36.1964673270295
Condition 3: 24 Hour
Replicate 12.5401027314644
Replicate 20.79059807824468
Replicate 31.613037723583


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_60671.p1 GENE.S_Transcript_60671~~S_Transcript_60671.p1 ORF type:5prime_partial len:172 (+),score=31.68,UBN2_3|PF14244.2|1.5e-27,Retrotrans_gag|PF03732.13|4e-08 S_Transcript_60671:3-518(+)
AAGAGAAAATTAGGTTTTGTGAAGGGAACTGTGCTGAGATGTGATGATGATCCAACAAAGGCTGATCAATGGGACACATGTAACTCTATGGTAATTGCTTGGCTCCTTAATTCCATGATTGAATCAGTCAGACGTTCTGTTTTGTACATTGATTCTGCCTTTGCTATGTGGATGCATCTTGAAACTCGCTTTGCTGTTAGTAATGGTGCTAGAAAGTACAAAATAAATAAAGAAATATATGATCTGAGACAGAATGGTGCTAACATTAATGAATTCTATACTAGAATGAGATGTCTATGGGAAGAATTGGATTCCATGAGTAGTTTGCCAAAAATTACGGAGTTTACTGAAGAGATTAAGACTTTTCTCAAGGCACTTGATAGGCAGCAAGAAGAGCATAGACTCTTTCAGTTCTTAAATGGACTTGACAGTGTATATAACACACAGAGAAGCAACTTGCTGTTGAAATTGCTTGTTCTAATTTGCAACAAGAGGAAACTCAGAGAGATGTATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_60671.p1 GENE.S_Transcript_60671~~S_Transcript_60671.p1 ORF type:5prime_partial len:172 (+),score=31.68,UBN2_3|PF14244.2|1.5e-27,Retrotrans_gag|PF03732.13|4e-08 S_Transcript_60671:3-518(+)
KRKLGFVKGTVLRCDDDPTKADQWDTCNSMVIAWLLNSMIESVRRSVLYIDSAFAMWMHLETRFAVSNGARKYKINKEIYDLRQNGANINEFYTRMRCLWEELDSMSSLPKITEFTEEIKTFLKALDRQQEEHRLFQFLNGLDSVYNTQRSNLLLKLLVLICNKRKLREMY*

Click here to download the sequence:
Link to NCBI Protein BLAST