Transcript Information: S_Transcript_61138.p1


Annotated TAIR IDAT5G60710.1
Annotated Gene NameZinc finger (C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:24410953-24414849 | Reverse length=704
E-Value8.1E-244
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.106444858975
Replicate 210.182825949622
Replicate 311.618434535425
Condition 2: 8 Hour
Replicate 114.763731758015
Replicate 216.408000394919
Replicate 315.690046977141
Condition 3: 24 Hour
Replicate 18.0542143373809
Replicate 29.0775478727545
Replicate 37.8609820095521


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_61138.p1 GENE.S_Transcript_61138~~S_Transcript_61138.p1 ORF type:complete len:754 (+),score=155.35,VWA|PF00092.24|1.9e-23,Vwaint|PF14624.2|1.1e-21,VWA_2|PF13519.2|1.7e-21,VWA_3|PF13768.2|6.9e-19,VWA_CoxE|PF05762.10|2.2e-09,zf-RING_11|PF17123.1|2e-08,zf-RING_2|PF13639.2|4.6e-08,zf-C3HC4|PF00097.21|3.3e-07,zf-rbx1|PF12678.3|3.7e-06 S_Transcript_61138:367-2628(+)
ATGGGGAGCAGCAGTAAATGGAGGAAAGCGAGACTAGCTTTCGGGTGCATTCAGGTCCCTCGTACTCTTGGTGGTGCTGATGATGATTCCTCTAGTTCATCTTCTACCCTCGCCATCAACAACAATAACGATAACCCACAAAATAATACTCGTCCTAACAATAACAACGACGTCGTTTCATCTTCTCTTGAACGGCGTCGTTTATCAGACGCTGCGCTGCCTTCGTCGTCTCTCTCTCCTGCTACTGATTTTCGCCCTCCTTCCCCCGTCACTCCCACCCCTTCTTCCTCTGGCCTTCTTCGCTTCTCTCGCCACTCCTCCAGATCTTCCAAGATTGCCAAGTCTGGTGATATAGCAAATTTGCAGAAGACATGTGCAATATGCCTGAGTACTATGATCCCCGGCCAGGGCCATGCAATTTTTACAGCTGAATGCTCACATTCGTTTCACTTCTACTGCATCACTTCTAATGTAAAGCATGGAAACCCAACTTGCCCAGTTTGCAGGGCTAAGTGGAAAGAAATTCCCTTCCAACGTCAAAATTCCAAGGTTCTTCGTAGCTTGAGCAGAGATGAGCAGTTGATGGCTGCCTTGCAGCAGTTTCCTCTTCCTCAACCAGATGCCAATCAAAACTTCTCGTCAATATTTCATGTCGCTGAACCTATTATCTTTGATGATGATGACCCCATAGAGCAGCAGGATACGGTTACTAGCCAATCTGTCTCCGATGAGAGCTCTGGCTCTATTGAAAGAGTGGAAATAAGGGCATGCCCTGAAGTTCCGGCCATCGCCAAATCAGCCTCGTTTGAGAACTTCACAGTTCTGATTCATCTCAAGGCTCCTGTAACAAAAAAATTAATAGATTTTGAGTCCAACCTGTCATCCGGGTCTCCGGATTCTCGTGCACCGGTTGATCTTGTTACTGTTCTAGATGTCAGTGGCAGCATGGCAGGTACCAAGCTTGCATTGCTTAAACGAGCCATGGGGTTTGTGATACAGCACCTTGGCCCTCATGATCGGCTCTCCGTTGTTGCGTTTTCTTCTACAGCTCGTCGTGTCATCCCTCTTCGTCTTATGACCGACAGTGGAAGACAGCATGCACTTCAGGCTGTTAATTCTCTTTCGTCTAATGGAGGGACCAATATTGCTGAAGGTCTCAAAAAGGGTGCTAAGGTTATGCTAGAGCGGAAATGCAAGAACCCTGTAAGCAGTATCATCCTGTTATCTGATGGGCAGGACACCTATACCTCACCTGGTCCTGTTGGAGCACAATCAAGGACAGATTACAAGTCTCTTCTTCCCGTTTCTATCCAACAGAATTCAGGCACAGCCTTCCAGATTCCAGTGCACACATTCGGGTTTGGGGCAGACCATGATTCTGATTCAATGCATTCCATCTCTGAAGGTTCTGGAGGCACATTTTCCTTTATAGAAGCTGAGAGTGTAATTCAGGATGCATTTGCCCAGTGCATGGGAGGTATCCTTAGTGTGGTTGTACAAGAGCTGAAGGTCAAAGTTGAGAGTCTCTATCCTGGTCTGCTGCTTGGTTCAATCAAAGCCGGAAGTTACAAGACTCGGTTACTGCCCGATGCAAGAATGGGCCAGATTAATGTTGGAGATTTGTATGCTGAAGAGGAAAGGGATTTTCTGGTGACGTTAAATGTTCCTCATGCGTCTGTAAATGAGATGCCGTTGCTCAAGGTCACTTACTCATACAAGGATCCGATTTCAAAAGAGGCGATAACTTTGGAACAAGCTGAAGAAGTCAAGATCCAAAGGCCTGAGAAAACAGAAAAACTCGTTGTTTCCATGGAGGTGGACAGGCAACGCAACAGGCTAAAGGCTGCGGAAGCCATGTCAGGAGCTAAATCTGCAGCTGAACGGGGTGATTTGGCTGGTGCAGTGTCTATCCTTGATACCTGTCGTAAGACATTGTCAGAAAGTGCGTCTGCACAAGCTGGTGATCCCTTATGCATGTCTCTGGGCAACGAATTGAAGGAGATGCAAGAGAGGATGGCTAACCGTCAAGTTTATGAGGCATCTGGGAGGGCATATGTTTTGTCTGGATTGAGTTCACATTCATGGCAAAGGGCAACTGCAAGAGGCGACTCCACTAGCAGCACCAATCTATCTCAAGCTTACCAAACCTCAACCATGGCTGACATGATTACGCGATCACAGACCATGATCCTAGGAAGCTTGTCACCTCCTCCTCCCATCAGGCCGCCTCGATCACTATCCAGCCGTCCACAACCTAGGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_61138.p1 GENE.S_Transcript_61138~~S_Transcript_61138.p1 ORF type:complete len:754 (+),score=155.35,VWA|PF00092.24|1.9e-23,Vwaint|PF14624.2|1.1e-21,VWA_2|PF13519.2|1.7e-21,VWA_3|PF13768.2|6.9e-19,VWA_CoxE|PF05762.10|2.2e-09,zf-RING_11|PF17123.1|2e-08,zf-RING_2|PF13639.2|4.6e-08,zf-C3HC4|PF00097.21|3.3e-07,zf-rbx1|PF12678.3|3.7e-06 S_Transcript_61138:367-2628(+)
MGSSSKWRKARLAFGCIQVPRTLGGADDDSSSSSSTLAINNNNDNPQNNTRPNNNNDVVSSSLERRRLSDAALPSSSLSPATDFRPPSPVTPTPSSSGLLRFSRHSSRSSKIAKSGDIANLQKTCAICLSTMIPGQGHAIFTAECSHSFHFYCITSNVKHGNPTCPVCRAKWKEIPFQRQNSKVLRSLSRDEQLMAALQQFPLPQPDANQNFSSIFHVAEPIIFDDDDPIEQQDTVTSQSVSDESSGSIERVEIRACPEVPAIAKSASFENFTVLIHLKAPVTKKLIDFESNLSSGSPDSRAPVDLVTVLDVSGSMAGTKLALLKRAMGFVIQHLGPHDRLSVVAFSSTARRVIPLRLMTDSGRQHALQAVNSLSSNGGTNIAEGLKKGAKVMLERKCKNPVSSIILLSDGQDTYTSPGPVGAQSRTDYKSLLPVSIQQNSGTAFQIPVHTFGFGADHDSDSMHSISEGSGGTFSFIEAESVIQDAFAQCMGGILSVVVQELKVKVESLYPGLLLGSIKAGSYKTRLLPDARMGQINVGDLYAEEERDFLVTLNVPHASVNEMPLLKVTYSYKDPISKEAITLEQAEEVKIQRPEKTEKLVVSMEVDRQRNRLKAAEAMSGAKSAAERGDLAGAVSILDTCRKTLSESASAQAGDPLCMSLGNELKEMQERMANRQVYEASGRAYVLSGLSSHSWQRATARGDSTSSTNLSQAYQTSTMADMITRSQTMILGSLSPPPPIRPPRSLSSRPQPR*

Click here to download the sequence:
Link to NCBI Protein BLAST