Transcript Information: S_Transcript_61625.p1


Annotated TAIR IDAT5G19420.2
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:6547945-6552981 | Reverse length=1139
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.573136678178
Replicate 212.036213304149
Replicate 311.163184034932
Condition 2: 8 Hour
Replicate 116.354339489045
Replicate 214.220695168641
Replicate 315.720698576446
Condition 3: 24 Hour
Replicate 112.195478540293
Replicate 211.96453911817
Replicate 311.758759193766


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_61625.p1 GENE.S_Transcript_61625~~S_Transcript_61625.p1 ORF type:5prime_partial len:1021 (+),score=210.70,RCC1|PF00415.14|0.16,RCC1|PF00415.14|6.3e-11,RCC1|PF00415.14|5.6e-09,RCC1|PF00415.14|4.4e-12,RCC1|PF00415.14|1.3e-13,RCC1|PF00415.14|1.2e-08,RCC1|PF00415.14|2.1e-13,BRX|PF08381.7|1.7e-29,RCC1_2|PF13540.2|1.2e+04,RCC1_2|PF13540.2|7.6e+03,RCC1_2|PF13540.2|0.0012,RCC1_2|PF13540.2|1.9e-06,RCC1_2|PF13540.2|0.0059,RCC1_2|PF13540.2|26,RCC1_2|PF13540.2|0.00051,RCC1_2|PF13540.2|7.1e-05,RCC1_2|PF13540.2|3e+02,BRX_N|PF13713.2|1.1e+04,BRX_N|PF13713.2|6e-18,FYVE|PF01363.17|1.5e-12,BRX_assoc|PF16627.1|3.4e-09 S_Transcript_61625:1-3063(+)
TTCCAAAGGTATCCTCGTCCAGAGAAGGAATACCAGTCTTTTTCTCTCATATATAATGATAGATCATTGGATTTGATTTGCAAAGATAAAGATGAAGCCGAGGTATGGTTTAGTGGTCTCAAAGCCTTAATCTCAAGGAGCCATCAAAGGAAATGGAGAACAGAATCAAGAAGTGATGGGATTCCATCTGAAGGAAATAGTCCACGAACATATACCCGAAGAAGCTCCCCTTTACACTCTCCCTTTGCCAGTGGGGATGGCTTGCCAAAGGATGGCAGCGATCACCTTCGCCTCCATACTCCATATGACAGTCCCCCGAAGAATGGTTTGGATAAGGCATTTTCAGATGTGATGTTTGCTGTTCCTCCAAAGGGGTTTTTCCCCTCAGATTCTGCTGGATCTGCCCATTCCTTGTCATCAGGGTCTGATAGTGTATATAGTCACATGAAGGGAATGGGTGCAGATACTTTTAGAATGAGTTTATCAAGTGCTGTAAGCTCATCAAGTCAGGGTTCTGGTCATGATGATGGGGATGCCCTGGGTGATGTTTTCATCTGGGGAGAAACTACAGGAGATGGCATTTTGGGTGGTGGAGTGCATAGAGTAGGGAGCTGTTATGGTGTCAAGATGGATTCTCTTTTGCCCAAGGCCTTAGAGTCTGCTGTGGTCCTTGATGTTCAGAACATAGCTTGTGGTGGACGTCATGCAGCTTTGGTTACTAAACAAGGGGAGATTTTTTCTTGGGGTGAGGAATCTGGCGGTAGGCTAGGGCATGGGGTTGATGCTGATGTGTCACATCCAAAGCTTATAGATGCCCTCAGCAATACTAACATTGAGCTTGTAGCATGTGGTGAGCATCATACTTGTGCTGTTACCCTTTCTGGTGAGCTATATACATGGGGTGATGGTGCTTTCAATTTTGGTCTTCTTGGGCATGGAAATTATGTGAGTCATTGGGTTCCAAAGAGAGTGAATGGTCCATTGGAGGGTATACATGTTTCATACATCTCCTGCGGACCCTGGCATACAGCTGTTGTCACCTCTGCTGGCCAGTTGTTTACTTTTGGTGACGGTACATTTGGTGTTTTAGGCCATGGAGACCGCAGAAGTGTTTCCGTGCCACGAGAAGTGGAGTCCCTCAAGGGTCTCCGCACAGTTCGAGCTGCTTGTGGTGTCTGGCATACTGCTGCAGTCATCGAAGTTATGGTTGGGAATTCAGGGTCAAGCAACTGCTCTTCAGGTAAGCTGTTCACATGGGGAGATGGAGATAAAGGTCGACTTGGGCATGGTGACAAGGACTCAAAACTGGTTCCTACATGTGTTGCAGCTCTTGTCGAGCCTAACTTTTGTCAGGTTGCCTGTGGACACAGCATCACAGTCGCGCTTACAACTTCTGGTCATGTTTATACTATGGGCAGCCCTGTTTATGGTCAACTAGGTAATCCCCATACCGATGGGAAACTCCCAGTTCGTGTGGAAGGAAAACTCTCAAGGTGCTTTGTAGAAGAGATAGCTTGTGGCGCTTACCATGTAGCTGTGTTGACCTCAAGAACTGAGGTTTACACTTGGGGAAAGGGAGCAAATGGAAGATTAGGTCATGGGGATACAGAAGATAGAAGTGCCCCAACATTGGTAGGAGCTCTAAAGGACAAGCAAGTGAGAAGTATTGCATGTGGTACAAACTTCACTGCTGCTATCTGCTTGCATAAGTGGGTCTCCGGTGTTGATCAATCAATGTGTTCTGGCTGTCGTCTGCCTTTTAACTTCAAAAGAAAACGTCATAATTGTTATAACTGTGGGCTTGTATTTTGTCATTCATGTAGTAGTAAAAAGTCTCTTAAGGCCTCTATGGCACCAAATCCAAACAAACCTTATCGTGTCTGTGATTGTTGTCTTGCGAAACTCAAGAAAGCAATTGAGACTGACGCGCCATCCTTCTCCTCGGCCAGTAGAAGAGGAGCTGTGAATCAGGGTTTCACTGATCTAAATGAGAGAGAGGAAAAGGTTGAACCTGCATCCCGCGGTCAGCTCACTAGATACTCTTCAATGGACTCCTTGACACAGTTGGACAGCCGTTCCAAGAAAAACAAGAAATATGAATTTAATAGTAGTCGTGTATCACCCGTGCCAAATGGAGGTTCTCAATGGGGAGCTAATATATCTAGGTCTTTTAATCCTGTATTTGGGTCATCAAAGAAATTCTTCTCCGCTTCAGTTCCTGGGTCCAGGATAGTTTCTCGAGCAACTTCACCAATATCTAGACAACCCAGTCCACCTCGTTCAACCACACCCACACCAACACTCTCAGGACTTATGTCTCCAAAGTTGACTGTGGATGATGAGAAAAGGACTAATGAAGGCCTCAGCCAAGAGGTTATCAGATTGAGAGCACAGGTGGAAAGCCTCACTCGCAAAGCCCAACTGCAAGAGATTGAATTGGAAAAAACAACTAAACAATTGAAGGAGGCAATAGCAATTGCAGGTGAAGAGACTGCAAAATGCAAAGCAGCAAAGGAAGTGATCAAATCACTTACTGCCCAGCTGAAAGAGATGGCTGAAAGGCTGCCTGTTGGAGCTACACGAAATAGCAAATCTCCTCCTTTTCCAGCTTTGACGTCCACCCCAACTCTAGGCGATGTTTCAGCCTCGCTTGACCAGTTCAATGATCAGATACCTGGCCTTCTGGCAGATTCAAATGGTTTAAATGGTGTAACACTTTCAAATGGGTCGAGCACCCCAAGCAGCAACCGAAGCTCTGTCCAGAGAATAGTAAGTTCTGTAAGTTCAGATACAATAAGAAATGGGAATAGAACTAGAGAAGGTGAACCTCGTCCTGAGAATGAATGGGTTGAGCAAGATGAGCCTGGTGTATATATTACTTTCGTCTCTTTACCTGGCGGTATTAAGGATCTAAAGCGAGTTCGGTTTAGCCGGAAAAGGTTCAGTGAAAAACAGGCAGAACAATGGTGGGCAGAAAATCGGGCCAGAGTATACGACCAATACAATGTACGTACTGCTGACAAGTCAAGTGTTGGTGTTGGGAGTGAAGACATAGCTCATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_61625.p1 GENE.S_Transcript_61625~~S_Transcript_61625.p1 ORF type:5prime_partial len:1021 (+),score=210.70,RCC1|PF00415.14|0.16,RCC1|PF00415.14|6.3e-11,RCC1|PF00415.14|5.6e-09,RCC1|PF00415.14|4.4e-12,RCC1|PF00415.14|1.3e-13,RCC1|PF00415.14|1.2e-08,RCC1|PF00415.14|2.1e-13,BRX|PF08381.7|1.7e-29,RCC1_2|PF13540.2|1.2e+04,RCC1_2|PF13540.2|7.6e+03,RCC1_2|PF13540.2|0.0012,RCC1_2|PF13540.2|1.9e-06,RCC1_2|PF13540.2|0.0059,RCC1_2|PF13540.2|26,RCC1_2|PF13540.2|0.00051,RCC1_2|PF13540.2|7.1e-05,RCC1_2|PF13540.2|3e+02,BRX_N|PF13713.2|1.1e+04,BRX_N|PF13713.2|6e-18,FYVE|PF01363.17|1.5e-12,BRX_assoc|PF16627.1|3.4e-09 S_Transcript_61625:1-3063(+)
FQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHQRKWRTESRSDGIPSEGNSPRTYTRRSSPLHSPFASGDGLPKDGSDHLRLHTPYDSPPKNGLDKAFSDVMFAVPPKGFFPSDSAGSAHSLSSGSDSVYSHMKGMGADTFRMSLSSAVSSSSQGSGHDDGDALGDVFIWGETTGDGILGGGVHRVGSCYGVKMDSLLPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDADVSHPKLIDALSNTNIELVACGEHHTCAVTLSGELYTWGDGAFNFGLLGHGNYVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRRSVSVPREVESLKGLRTVRAACGVWHTAAVIEVMVGNSGSSNCSSGKLFTWGDGDKGRLGHGDKDSKLVPTCVAALVEPNFCQVACGHSITVALTTSGHVYTMGSPVYGQLGNPHTDGKLPVRVEGKLSRCFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTEDRSAPTLVGALKDKQVRSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDCCLAKLKKAIETDAPSFSSASRRGAVNQGFTDLNEREEKVEPASRGQLTRYSSMDSLTQLDSRSKKNKKYEFNSSRVSPVPNGGSQWGANISRSFNPVFGSSKKFFSASVPGSRIVSRATSPISRQPSPPRSTTPTPTLSGLMSPKLTVDDEKRTNEGLSQEVIRLRAQVESLTRKAQLQEIELEKTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKEMAERLPVGATRNSKSPPFPALTSTPTLGDVSASLDQFNDQIPGLLADSNGLNGVTLSNGSSTPSSNRSSVQRIVSSVSSDTIRNGNRTREGEPRPENEWVEQDEPGVYITFVSLPGGIKDLKRVRFSRKRFSEKQAEQWWAENRARVYDQYNVRTADKSSVGVGSEDIAH*

Click here to download the sequence:
Link to NCBI Protein BLAST