Transcript Information: S_Transcript_61708.p1


Annotated TAIR IDAT5G52980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21482329-21483642 | Reverse length=222
E-Value1.2E-86
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 117.478877929885
Replicate 217.014524150287
Replicate 314.066493623085
Condition 2: 8 Hour
Replicate 116.716937324871
Replicate 216.494498573358
Replicate 319.961026782631
Condition 3: 24 Hour
Replicate 118.420050061984
Replicate 215.557362183764
Replicate 317.206564191626


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_61708.p1 GENE.S_Transcript_61708~~S_Transcript_61708.p1 ORF type:complete len:236 (+),score=55.22,Vma12|PF11712.4|1.7e-08 S_Transcript_61708:143-850(+)
ATGACTGCAAACGCAGAATCAGAAGCTCCAACATCTCCATCTTCATCTCCCTCAACAGCAAGTGGTTCAAGTGGTCTAATTCTATCAAACACAGAACCCATCCGCTCTTTCTTAACTTCATCATCATCCCAAAATTCCGACCTTCCTGAACATCTCCGACAATCAGCAATTTCTCTCTCCTCGTCACCCTCAATCCCCTACAAGTCCCTCCGATCCATCTGGACTGCCTCAGATCCCGCCACGCGTCCTCCCCTCTCTATCCTCCTCCACGGTTCTTCTTTCCTCTTCACCAGCCCTAAACCCAGAGAAAAGAGTGAAGAGCTGAAGGCGAGATTGAAGAAGCTGGAGGAACTAGCGGAGAAGAAGGCGTATGCTGAGCTTGTGAAAGATATAACTCCAAAGAAGGAGCCAGAGCCTTTCTCTTCTTACAAAGATCAGCTTGGATTTGGTTTACACGTTGCAGTCACTATGTTTACTGGCTACTTGGTTGGATATGTTGCCTTTAGAGCATTGTTCAGCCGCAATCCTGTCATGAGTGCTGCTGGAGGCATTGTCGGTTTGGTTTGTGGCATGCTTGTAGAAACACTTCTGTTCATAATCAGAACTTCAGATGAAGAAGATAGAACATCTGCTTCTGGCTCAACTTCTAAATTGAGGATAAAAACTTCTTCCCCAACCTCTAACTTGAAGGTTAAGAAAAATCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_61708.p1 GENE.S_Transcript_61708~~S_Transcript_61708.p1 ORF type:complete len:236 (+),score=55.22,Vma12|PF11712.4|1.7e-08 S_Transcript_61708:143-850(+)
MTANAESEAPTSPSSSPSTASGSSGLILSNTEPIRSFLTSSSSQNSDLPEHLRQSAISLSSSPSIPYKSLRSIWTASDPATRPPLSILLHGSSFLFTSPKPREKSEELKARLKKLEELAEKKAYAELVKDITPKKEPEPFSSYKDQLGFGLHVAVTMFTGYLVGYVAFRALFSRNPVMSAAGGIVGLVCGMLVETLLFIIRTSDEEDRTSASGSTSKLRIKTSSPTSNLKVKKNQ*

Click here to download the sequence:
Link to NCBI Protein BLAST