Transcript Information: S_Transcript_61710.p1


Annotated TAIR IDAT5G52980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21482329-21483642 | Reverse length=222
E-Value2E-15
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.9146044054087
Replicate 23.9681276182581
Replicate 33.7150835276318
Condition 2: 8 Hour
Replicate 12.4547211875837
Replicate 22.2532797191092
Replicate 32.3002713242786
Condition 3: 24 Hour
Replicate 12.2002040925778
Replicate 21.6304900414638
Replicate 32.5403497961987


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_61710.p1 GENE.S_Transcript_61710~~S_Transcript_61710.p1 ORF type:3prime_partial len:139 (+),score=18.08 S_Transcript_61710:274-687(+)
ATGAAGGTGAGATCTCGAAAGAAGTGTGTGTGTGTCGTGTCGTGTCGTGTCGTTGGAGAAGAATTACTCCACAAGATGACTGCAAACGCACAATCAGAAGCTCCAACACCTTCATCTTCATCTTCCTCAACAGGTAGTGGTTCAAGTGGTCTAATTCTATCAAACACAGAACCCATCCGCTCTTTCTTAACTTCATCATCATCCCAAAATTCCGACCTTCCTGAACATCTCCGACAATCAGCAATTTCTCTCTCCTCGTCACCCTCAATCCCCTACAAGTCCCTCCGATCCATCTGGACTGCCTCAGATCCCGCCACGCGTCCTCCCCTCTCTATCCTCCTCCACGGTTCTTCTTTCCTCTTCACCAGCCCTAAACCCAGAGAAAAGAGTGAAGAGCTGAAGGCGAGATTGAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_61710.p1 GENE.S_Transcript_61710~~S_Transcript_61710.p1 ORF type:3prime_partial len:139 (+),score=18.08 S_Transcript_61710:274-687(+)
MKVRSRKKCVCVVSCRVVGEELLHKMTANAQSEAPTPSSSSSSTGSGSSGLILSNTEPIRSFLTSSSSQNSDLPEHLRQSAISLSSSPSIPYKSLRSIWTASDPATRPPLSILLHGSSFLFTSPKPREKSEELKARLK

Click here to download the sequence:
Link to NCBI Protein BLAST