Transcript Information: S_Transcript_61713.p1


Annotated TAIR IDAT5G52980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21482329-21483642 | Reverse length=222
E-Value7E-49
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.374559803545
Replicate 210.190017210886
Replicate 39.455809602185
Condition 2: 8 Hour
Replicate 17.1385840468369
Replicate 26.7305137856805
Replicate 35.419283289402
Condition 3: 24 Hour
Replicate 17.2199191197727
Replicate 27.8747141917817
Replicate 36.9467495183583


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_61713.p1 GENE.S_Transcript_61713~~S_Transcript_61713.p1 ORF type:complete len:236 (+),score=51.06,Vma12|PF11712.4|7.6e-08 S_Transcript_61713:107-814(+)
ATGACTGCAAACGCACAATCAGAAGCTCCAACACCTTCATCTTCATCTTCCTCAACAGGTAGTGGTTCAAGTGGTCTAATTCTATCAAACACAGAACCCATCCGCTCTTTCTTAACTTCATCATCATCCCAAAATTCCGACCTTCCTGAACATCTCCGACAATCAGCAATTTCTCTCTCCTCGTCACCCTCAATCCCCTACAAGTCCCTCCGATCCATCTGGACTGCCTCAGATCCCGCCACGCGTCCTCCCCTCTCTATCCTCCTCCACGGTTCTTCTTTCCTCTTCACCAGCCCTAAACCCAGAGAAAAGAGTGAAGAGCTGAAGGCGAGATTGAAGAAACTGGAGGAATTAGCAGAGAAGAAGGTGTATGCTGAGCTTGTGAAAGATATAACTCCAAAGAAGGAGCCAGAGCCTTTCTCTTCTTACAAAGATCAGCTTGGATTTGGTTTACACGTTGCAGTCACTATGTTTACTGGCTACTTGGTTGGATATGTTGCCTTTAGAGCATTGTTCAGCCGCAATCCTGTCATGAGTGCTGCTGGAGGCATTGTCGGTTTGGTTTGTGGCATGCTTGTAGAAACACTTCTATTCATAATCCAAACTTCAGATCACGAAGATAGAACATCTGCTTGTAGCTCAACTTCTAACTTGAAGATAAAAACTTCTTCCCCAACCACTAACTTGAAGGTTAAGAAAAATCAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_61713.p1 GENE.S_Transcript_61713~~S_Transcript_61713.p1 ORF type:complete len:236 (+),score=51.06,Vma12|PF11712.4|7.6e-08 S_Transcript_61713:107-814(+)
MTANAQSEAPTPSSSSSSTGSGSSGLILSNTEPIRSFLTSSSSQNSDLPEHLRQSAISLSSSPSIPYKSLRSIWTASDPATRPPLSILLHGSSFLFTSPKPREKSEELKARLKKLEELAEKKVYAELVKDITPKKEPEPFSSYKDQLGFGLHVAVTMFTGYLVGYVAFRALFSRNPVMSAAGGIVGLVCGMLVETLLFIIQTSDHEDRTSACSSTSNLKIKTSSPTTNLKVKKNQ*

Click here to download the sequence:
Link to NCBI Protein BLAST