Transcript Information: S_Transcript_61715.p2


Annotated TAIR IDAT5G52980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:21482329-21483642 | Reverse length=222
E-Value1E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.38569567007508
Replicate 20.15987528664866
Replicate 30
Condition 2: 8 Hour
Replicate 10.15453181389227
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.15829625717822
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_61715.p2 GENE.S_Transcript_61715~~S_Transcript_61715.p2 ORF type:internal len:138 (+),score=43.18 S_Transcript_61715:3-413(+)
TCTTTCACAAGCTCAGCATACACCTTCTTCTCTGCTAATTCCTCCAGTTTCTTCAATCTCGCCTTCAGCTCTTCACTCTTTTCTCTGGGTTTAGGGCTGGTGAAGAGGAAAGAAGAACCGTGGAGGAGGATAGAGAGGGGAGGACGCGTGGCGGGATCTGAGGCAGTCCAGATGGATCGGAGGGACTTGAAGGGGATTGAGGGTGACGAGGAGAGAGAAATTGCTGATTGTCGGAGATGTTCAGGAAGGTCGGAATTTTGGGATGATGATGAAGTTAAGAAAGAGCGGATGGGTTCTGTGTTTGATAGAATTAGACCACTTGAACCACTTGCTGTTGCGGAAGATGAAGATGACGGTGTTGGAGCTTTTGATTCTGGGTTTGCAGTCATCTTGTGGAGAAATTCTTCTCCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_61715.p2 GENE.S_Transcript_61715~~S_Transcript_61715.p2 ORF type:internal len:138 (+),score=43.18 S_Transcript_61715:3-413(+)
SFTSSAYTFFSANSSSFFNLAFSSSLFSLGLGLVKRKEEPWRRIERGGRVAGSEAVQMDRRDLKGIEGDEEREIADCRRCSGRSEFWDDDEVKKERMGSVFDRIRPLEPLAVAEDEDDGVGAFDSGFAVILWRNSSP

Click here to download the sequence:
Link to NCBI Protein BLAST