Transcript Information: S_Transcript_61728.p1


Annotated TAIR IDAT4G16310.1
Annotated Gene NameLSD1-like 3
Annotated Gene Symbol(s)LDL3
Annotation TypeOrtholog
Chromosome Positionchr4:9218636-9224764 | Forward length=1628
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.0470974711126
Replicate 28.8600437220416
Replicate 39.1581079971864
Condition 2: 8 Hour
Replicate 111.084701563259
Replicate 29.609860048938
Replicate 39.257489487546
Condition 3: 24 Hour
Replicate 111.216396641872
Replicate 29.3764793012435
Replicate 38.3984749443949


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_61728.p1 GENE.S_Transcript_61728~~S_Transcript_61728.p1 ORF type:complete len:1895 (+),score=520.26,Amino_oxidase|PF01593.20|5e-94,NAD_binding_8|PF13450.2|4.9e-14,SWIRM|PF04433.13|9.2e-14,SWIRM|PF04433.13|3.7e+03,Thi4|PF01946.13|2e-06,DAO|PF01266.20|4.1e-06,Pyr_redox_3|PF13738.2|1.3e-05,FAD_binding_2|PF00890.20|1.6e-05 S_Transcript_61728:669-6353(+)
ATGGAAGGTGAAGACAAAAAGGGTGGTCCTAAAAAGAGGTCTAAGATGGTGGAAATCAATTTGGATTCGGATGATGATGAGCCAATTGGGGCATTGTTTAAGTTGAAAAGCAAGAAGAACCCTAAGAAAGTTAAGTTGGCAAGTGATGGGGAGAAAGGTAAGAAGGTAGAGGTTGTTGTTAAGGTGGGAAAAGATGTGGCGGTGAATGAGGATTTTGGGGGAATGGAGGATACTCTAGCAAGCTTTAGGAAGAAGTTGAAGGGTCCTAAGAAAGATAGTGGGTCTGTGAGTTTAATGAAGAAGGAATTGGGATTGAAATTGGCTGAACCATCAGAGGGACATCTTGATGGGAAGGTTAAGGATGAGGGCTTTGTCGCTAAGTTGGTCAAAGATGAGGAGGATGAAGTTGGTTATCTGAATTCTGATGTAAATATTGGTCAAGGGTCAGAAAATAAGTGTGAGAAGATAGTTAAGAACTCCATGCCTGTATCAGCTGATGACAATTCATCCGAATTAAAAACGGAGAGGAAGGAGGGACTATTGGATCCCCTAAACAAGTCCAAGAAGAAGAGTAGGAAGTCCAAGTCTGCTTCAGCTGAAAACAATCTGAGGGCATCTATTGGGACGGACGCTGGTGAGTTCCCGAATACCAGTGCATTAGGAGATCAGGTGGAAGAGAAGGAAGCTTTATCTGGCCAGTCAGATGAAGTTTTGGTGGATTCTCTCTCTTCATTTTTTAGAAAGGCGCAGAAGTTCCAGTCCGGTTTGCAGAAAAGATCGCGAGCCTTGTCCGCTTCAAAATCCAGAAAGGGAGAGCAAGTCTCAGCAATTAATGTTTGTCCAATCTCAGATGATGCGTCTTTAGATCTTCTATCTATGAATCGGCGGAATCCTGTTTCAGATGACCGAATTAGCTCTAGAACTCCCCAGAGCAAGTCAGAAGCAGGTCAGGATTTGGGCGACCCAATTGGTGATGGGTCTGCCAGTGTGCCAGTGAGAGATTCTTCGAATGTTACTAATATGGATAAATATGAAAGTACTAGGTATAGTGATGATAGATGTGCTGACACTTCTCAGCCAGCTTTTGGTGAGGTATCTAGTTGTAGTTTGATTGGATGCTCTGAGAAAATACGAGAACTCAAAAGTAATGAAATTTGTGGGAATCAACAAGAACATAGAAGTAGTGAAGTTTGTGGGGAGGCTGAAGCGATCCAGGATTCTTGTGAAATGGTTTTTGGCAAGGATGCTTCTGAATCTCCTGCCACAGAAGTTAAAAAACAGTGTACTTTTGGTTCTCAAAATTCCAGACACCAGAATGGAGTTACGCATTTTGCCTCTTCAAATGCAAGCGGCGCAGTCAATGATCCTTTTTCTGCACCTGCGTCAGAATCTATGGTTGAGCTCAGCGAACTGGACAAGCATGAGTCTAATGTTATCTTGTTAGATAAGTTTGTTCCACATTCATTTGAGGCTTCAAGGAGTGATCCAGTATCGGCGGATCAAAATAAGGGAGAGGATGTATCTATGGCAACCGACGTAGATGAAGGAGCTAATGGGATATTATCCCCCTTTGTTGGGCCAGATGATGATGGTGCTTGTCAAGAAAATGCAGGATGCTTTTCTGTAGCCAGCAAGAAATGTAATAATATTGTTGTGAATGAACGCGCTGTCCGTAAAGCTAAAAAGCGCAAAGATGGTGACATGGCTTATGAGGGTGACATTGCTTGGGAGGTCCTTGTGCATGAGGAACATGATGTGGGCAGAGATCAAGGTACTCATTTGAAAGAGAGGTATTCCTCTTCAGATTCAGATTCTGATCATGCAGCTGTTTCAGTTGGTTTGAAAGCACATGCAATTGGTCCTGTTGAGAAGATTAGGTTTAAGGAGATCTTGAAACGCAAAGGTGGGCTTCAGGAATACTTGGAATGCAGGAACAAGATTTTAAGCCTTTGGAACAAGGATGTCACCCGTATCTTACCTCTTATGGATTGTGGAGTAACTGAAACTCCCACTACTAATGAACCTTCTCGTGCTACCCTGATGAGGGATGTATACACATTTCTTGACAAAAGTGGCTATATCAATACTGGAATAGCTGCTAACAGGGAGAAAGCAGATCCTAGTTCTAGAGGTAATTATAAACTCATGGGAGAAAAGAAGTTTGAGGGGAGTTCTGAAGCTTCTGTTAAAGACTCAGCAGATGGAGTTTCCTTTATCCTTGGTCAAGTCAAGAGCACTGATATACACACCGAGGCTAATGGTGATCTTACCTTTGGTGATGAAAGCCACACAAAAGAACCAGTGAAAAGTGTTGTGGAGAATGAATTTGATCTATCCTCTGATAAGCTGCCTGATGGGTGTGCAGTCACAGATGAATTAGATAAGCAACTTGCAGATGTTCAAATATCCAAAAGCATTGTGGAATCAGAATGTCCTGCTACTGATTCCCTCGAAAAGATCCTTGAGAATGGTACAGTTCCCAGGCAATCAATGAGATGTGGTCAGTTGGAGACCAATGATCTTGTGCAGTGTGATTTGGAAAACCAGAAAAGGATCATAATAGTGGGAGCAGGTCCTGCAGGTTTAACTGCTGCTCGTCACTTGCAAAGGCAAGGTTTTTCTGTCATTGTGCTTGAGGCAAGGAGTAGGATAGGTGGTCGGGTTTATACAGATCACTCCTCTCTTTCAGTTCCTGTGGACCTTGGGGCTAGCATTATTACCGGAGTTGAGGCTGATGTGACCAGTGAAAGACGACCAGACCCCTCCTCCTTGATTTGTGCTCAATTGGGTTTGGAGTTGACAATACTTAATAGTGACTGTCCACTTTATGATATTGTAACGGGTCAGAAGGTTCCTGCAGATGTTGATGAAGCTTTGGAAGCAGAGTTTAATAGTCTTCTTGATAATATGATGTTGGTTGTTGCTCAGATGGGGGACAGTGCAACCAGAATGTCTCTCGAGGATGGTTTAGAATATGGTCTTAAAAGATGCCACAAAGTCCTTTCTGGAACACACAGTGAGGGGTCTGAGACATTAAGGCCATTGGATGCCACCTTCAATGAAGAAAGTGGCACTGATGGCTGTCAGACTGTGGAAAGGAATGATGTTAAGGGTGCTTCACTGAGTCCTCTTGAGAGGAGGGTGATGGATTGGCATTTTTCCCACTTGGAGTATGGTTGTGCTGCTTTGCTGAAGGATGTATCTCTTCCTCATTGGAACCAGGATGATGTGTATGGAGGATTCGGAGGGGCCCATTGTATGATTAAAGGGGGTTATGGTGCAGTTATGGAATCTATTTCACATGGACTTTCTATTAATTTGAACCAGGTTGTTGCCAACATTTCATACTCTGGAATGGACCCTGGAAGAGCGGCGGATGATTCTTCTCACAAGGTAAAAGTTTCCACAACTAGCGGCAATGAGTTCTTTGGAGATGCAGTTTTGATTACTGTACCACTTGGGTGCTTAAAGGCAGAATCCATCAAGTTCTCTCCACCGTTGCCACAGTGGAAGCATTCAGCCATCCAGCGGTTGGGTTTTGGTGTTCTCAATAAAGTAGTCCTGGAGTTCACAGAAGTGTTTTGGGATGATACTGTGGATTACTTTGGAGCTACTGCTGAGCATAGTGACCTGAGGGGCCGCTGCTTCATGTTCTGGAATGTCAAGAAGACAGTTGGGGCTCCTGTTCTTATAGCTTTAGTTGTGGGTAAAGCAGCTGTAGATGGTCAAGGTGTGAGCCACTCTGATCATGTAAGTCACGCTCTAGCAGTTCTACGCAAACTATTTGGGGATACTGCTGTCCCTGATCCTGTTGCATCAGTCGTGACGGACTGGGGAAGAGATCCTTTTAGCTACGGTGCATATTCTTATGTTGCTGTCGGAGCTACTGGGGAAGACTATGACATATTGGGCAGACCAGTTGAGAATTGTTTGTTTTTTGCTGGTGAAGCTACCTGCAAAGAGCATCCAGATACAGTAGGTGGTGCAATGCTGAGTGGGCTTCGGGAGGCAGTTCGTATTATTGACATATTGACTACTGGAAGTGATTACACGGCAGAGGCAGAAGCAATTGAAGCTGCCCACAGACAATCAAACAGTGAGAAGAATGAAGTCAAGGATATCGCAAGAAGACTTGATGCAGTTGATCTCTCCAATTCCTTCTACAAGAGCCCATCAGATAGATCCCAGATGTTGGTGAGGGAAAGTTTACTGCAGGATATTTTCTTTAATGCTAAAACTTCTGCTGGGCGATTGCGTTTGGCTAAAGAGTTGTTGAGACTCCCTGTTGACTTTCTGAAGTCTTTTGCTGGGACTAAAGATGGGCTCAGTGTACTCAACTCATGGATATTGGATTCCATGGGAAAGGATGCAACTCAACTCCTGCGCCACTGCGTCCGTATTCTTGTGTCGGTCTCCACTGACTTGGTAGCTGTTCGTTTGTCAGGTATTGGGAAGACTGTCAAAGAGAAAGTTTGTGTTCATACAAGCCGTGATATACGTAGCATAGCGAGTCAATTGGTCAACATGTGGATTGAAGTTTTCCGTAAGGAAAAGGCTACTAATGGTGGCTTGAAGTTATTGAGACACGTGACAAATGCAGATTCCTCAAAAGGTAGAGGAAAAGATCCAGGCTCCAGAAAGCCTCCTATGCAGCACTCCGGTGGGAATAAAGCAAATTTAAGCTCAAAGAAGTTCATTGGAAAGCAAGGAAAGCCCGAAACTGTGAGTAACCTAAAAGGAGATTCTAAGGTGATGGAGGATGAGATACCTTTATCTGAAGAAGAACGTGCTGCTGTTGCTGCTGCAGAGGCAGCCCAGGCTGCTGCTCTAGCCGCAGCTGAGGCATATGCGTCATCAGAAGCTAGGTATAATATGATGCAGTTGCCCAAGATACCATCTTTCCAGAAGTTTGCTAGACGAGAGCAGTATGCACAGATGGATGAATCTGAACGAAAAAGGTGGTCTGGTGGCGTTCTGGGAAGACAGGACTGTATTTCAGAAATAGACTCTAGAAATTGTAGAGTTAGGGACTGGTCTGTTGACTTCTCTGCAACCTGTGCCAATCTTGACAATTCAAGAATGTCAGCAGATAACCTTTCACAGCGAAGTCTTTCAAATGATATGCCCCAGTTGAACTGGAGAGAGCATTCCGGGGAGAGTGCAGCTGGGGACAGCACTGCATTTACTAAAGCATGGGTTAATTCTTCTGGTAGTGATGGGATAAAAGACTACCATGCCATTGAGAGATGGCAGTGTCAAGCTGCAGAAGCTGAGTACGAATTTCAGTCCTTCACCCATGTTGGTGATGAGGAAGATTCAAGTACAGTGTCAAGATTGCTGACACGGAAGCACGAAGGACTGGTAAATGAGAGTTCAGTTTCGCAAGTGACAATAAACATGGATTTGAGTAACCAACGAAGAGGAGCTGAGCATATTAAGCAAGGCGTTGTGGATTATGTTGCATCATTGCTCATGCCTTTATATAAAGCTAGGAAGATCGATAGAGATGGATACAAGTCCATAATGAAAAAGAGTGCTACTAAGGTAATGGAGCAGACAACAGATGCAGAGAAAGCAATGGCTGTGTCTGAGTTTCTGGATTTCAAGCGTAAGAATAAGATTCGTGCGTTTGTTGACAAGCTGATTGAGAGACACATGTCATTAAAGCCAGTTGTCAAACCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_61728.p1 GENE.S_Transcript_61728~~S_Transcript_61728.p1 ORF type:complete len:1895 (+),score=520.26,Amino_oxidase|PF01593.20|5e-94,NAD_binding_8|PF13450.2|4.9e-14,SWIRM|PF04433.13|9.2e-14,SWIRM|PF04433.13|3.7e+03,Thi4|PF01946.13|2e-06,DAO|PF01266.20|4.1e-06,Pyr_redox_3|PF13738.2|1.3e-05,FAD_binding_2|PF00890.20|1.6e-05 S_Transcript_61728:669-6353(+)
MEGEDKKGGPKKRSKMVEINLDSDDDEPIGALFKLKSKKNPKKVKLASDGEKGKKVEVVVKVGKDVAVNEDFGGMEDTLASFRKKLKGPKKDSGSVSLMKKELGLKLAEPSEGHLDGKVKDEGFVAKLVKDEEDEVGYLNSDVNIGQGSENKCEKIVKNSMPVSADDNSSELKTERKEGLLDPLNKSKKKSRKSKSASAENNLRASIGTDAGEFPNTSALGDQVEEKEALSGQSDEVLVDSLSSFFRKAQKFQSGLQKRSRALSASKSRKGEQVSAINVCPISDDASLDLLSMNRRNPVSDDRISSRTPQSKSEAGQDLGDPIGDGSASVPVRDSSNVTNMDKYESTRYSDDRCADTSQPAFGEVSSCSLIGCSEKIRELKSNEICGNQQEHRSSEVCGEAEAIQDSCEMVFGKDASESPATEVKKQCTFGSQNSRHQNGVTHFASSNASGAVNDPFSAPASESMVELSELDKHESNVILLDKFVPHSFEASRSDPVSADQNKGEDVSMATDVDEGANGILSPFVGPDDDGACQENAGCFSVASKKCNNIVVNERAVRKAKKRKDGDMAYEGDIAWEVLVHEEHDVGRDQGTHLKERYSSSDSDSDHAAVSVGLKAHAIGPVEKIRFKEILKRKGGLQEYLECRNKILSLWNKDVTRILPLMDCGVTETPTTNEPSRATLMRDVYTFLDKSGYINTGIAANREKADPSSRGNYKLMGEKKFEGSSEASVKDSADGVSFILGQVKSTDIHTEANGDLTFGDESHTKEPVKSVVENEFDLSSDKLPDGCAVTDELDKQLADVQISKSIVESECPATDSLEKILENGTVPRQSMRCGQLETNDLVQCDLENQKRIIIVGAGPAGLTAARHLQRQGFSVIVLEARSRIGGRVYTDHSSLSVPVDLGASIITGVEADVTSERRPDPSSLICAQLGLELTILNSDCPLYDIVTGQKVPADVDEALEAEFNSLLDNMMLVVAQMGDSATRMSLEDGLEYGLKRCHKVLSGTHSEGSETLRPLDATFNEESGTDGCQTVERNDVKGASLSPLERRVMDWHFSHLEYGCAALLKDVSLPHWNQDDVYGGFGGAHCMIKGGYGAVMESISHGLSINLNQVVANISYSGMDPGRAADDSSHKVKVSTTSGNEFFGDAVLITVPLGCLKAESIKFSPPLPQWKHSAIQRLGFGVLNKVVLEFTEVFWDDTVDYFGATAEHSDLRGRCFMFWNVKKTVGAPVLIALVVGKAAVDGQGVSHSDHVSHALAVLRKLFGDTAVPDPVASVVTDWGRDPFSYGAYSYVAVGATGEDYDILGRPVENCLFFAGEATCKEHPDTVGGAMLSGLREAVRIIDILTTGSDYTAEAEAIEAAHRQSNSEKNEVKDIARRLDAVDLSNSFYKSPSDRSQMLVRESLLQDIFFNAKTSAGRLRLAKELLRLPVDFLKSFAGTKDGLSVLNSWILDSMGKDATQLLRHCVRILVSVSTDLVAVRLSGIGKTVKEKVCVHTSRDIRSIASQLVNMWIEVFRKEKATNGGLKLLRHVTNADSSKGRGKDPGSRKPPMQHSGGNKANLSSKKFIGKQGKPETVSNLKGDSKVMEDEIPLSEEERAAVAAAEAAQAAALAAAEAYASSEARYNMMQLPKIPSFQKFARREQYAQMDESERKRWSGGVLGRQDCISEIDSRNCRVRDWSVDFSATCANLDNSRMSADNLSQRSLSNDMPQLNWREHSGESAAGDSTAFTKAWVNSSGSDGIKDYHAIERWQCQAAEAEYEFQSFTHVGDEEDSSTVSRLLTRKHEGLVNESSVSQVTINMDLSNQRRGAEHIKQGVVDYVASLLMPLYKARKIDRDGYKSIMKKSATKVMEQTTDAEKAMAVSEFLDFKRKNKIRAFVDKLIERHMSLKPVVKP*

Click here to download the sequence:
Link to NCBI Protein BLAST