Transcript Information: S_Transcript_61949.p1


Annotated TAIR IDAT5G47010.1
Annotated Gene NameRNA helicase, putative
Annotated Gene Symbol(s)UPF1, LBA1, ATUPF1
Annotation TypeOrtholog
Chromosome Positionchr5:19072009-19078856 | Forward length=1254
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.089548148634
Replicate 226.043457956453
Replicate 328.316559411377
Condition 2: 8 Hour
Replicate 131.535423888779
Replicate 230.761291879624
Replicate 329.158470780399
Condition 3: 24 Hour
Replicate 131.402020017729
Replicate 224.320835535939
Replicate 326.114333711901


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_61949.p1 GENE.S_Transcript_61949~~S_Transcript_61949.p1 ORF type:3prime_partial len:848 (+),score=168.04,UPF1_Zn_bind|PF09416.6|4.3e-72,UPF1_Zn_bind|PF09416.6|1.7e+03,AAA_11|PF13086.2|8.5e-25,AAA_11|PF13086.2|2.4e-29,AAA_12|PF13087.2|1e-28,AAA_30|PF13604.2|4.9e+02,AAA_30|PF13604.2|1.4e-12,AAA_19|PF13245.2|1.3e-13 S_Transcript_61949:230-2770(+)
ATGGATTCACAGGCGAGCAACCTCTACGAGACGGCATCCCAGCCCGACACCGGCAACGACGCCTACACTTTCCTCGAATTCAACACTCAAGTTGTCGGCCCTGATGACGTCGACGATTTCGCTTACCCCGAATTCCACGAACTCTCTCAACCTCCTCCTCAACCTTCTTCTTCGATCCGTTCTCCTTCTTCCTCTTCTTCTGCCTGGCCCACACCTTCAGATTCCGTCATCAAGGACGTCACTCAACAACAACATCAACCTCAACCTTCTTCGGAGCCCTCCCCCTCGGCCTCGGCCTCCACGTCGTCCTCCAAGGCTGCTGCCGTCGAGGCGTTGGCAGCCGGCATGAGCGGGTTGAACTTCGAAGAGACGGCTGGTGATGAGGATGGATTTGTTGATCAGTTTGGGAAGGGGGATTTCACGGAGCATGCTTGTAGGTACTGTGGCGTCCAGAATCCGGCTTGTGTTGTTAGATGCAATGTCCCTTCTTGTCGTAAGTGGTTCTGTAATTCTAGAGGCAATACTTCCGGCTCTCACATTGTTAACCACCTGGTTCGAGCAAAACACAAAGAAGTTTGTCTTCATAAAGATAGTCCATTAGGGGGAACAATTCTTGAGTGCTATAACTGTGGTTGTCGCAATGTTTTCTTACTGGGGTTTATCTCTGCGAAGACAGAGAGTGTAGTTGTTCTTCTCTGTAGAGAGCCTTGTTTAAGCGTCAATGCACTCAAGGACATGAATTGGGATTTGAGTCAATGGTGTCCTCTTATTGATGATCGGTGCTTTCTTCCATGGCTTGTTAAGGTTCCCTCTGAACAAGAGCAACTAAGGGCCAGGCAAATCAGTGCACAGCAGATAAACAAGATTGAAGAACTTTGGAAAACAAATCCCGATGCATCTTTGGAGGATCTTGAGAAGCCTGGTGTAGATGATGAGCCTCAGCCTGTTGCTTTGAAATATGAAGATGCTTACCAGTATCAAAATGTGTTTGCCCCTCTTATCAAGCTTGAAGCTGACTACGATAAAATGATGAAAGAGTCTCAAAGTAAGGATAACGTCACTGTACGCTGGGATATTGGTCTTAATAAGAAGCGAATTGCATATTTTGTGTTCCCTAAGGAGGATAATGAGTTGCGTCTTGTACCTGGTGATGAGCTGCAGCTACGTTATTCTGGAGATGCTGCTCATCCTGCTTGGCAGTCTGTTGGGCATGTGATCAAATTAACTGCACAAGAGGAGGTTGCACTTGAGCTTCGAGCTAGTCAGGGAGTTCCTGTTGATATAAATCATGGTTTCAGTGTTGATTTTGTTTGGAAGAGTACAAGCTTTGATCGTATGCAAAGTGCCATGAAAACTTTTGCAGTGGATGAGACTAGTGTTAGTGGATACATTTATCACCACTTGTTGGGCCATGAAGTTGAGTTGCAGATGGTTCGGAATACTCTGCCACGTCGATTTGGTGCTCCAGGTCTTCCGGAGCTTAATGCATCACAGGTTTTTGCTGTAAAGAGCGTTCTTCAGAAGCCTATTAGTTTGATTCAAGGTCCTCCTGGCACTGGGAAAACCGTCACTTCTGCTGCAATTGTATATCACATGGCCAAACAAGGGCAAGGACAGGTGTTGGTATGTGCACCAAGTAATGTTGCTGTGGATCAGCTAGCTGAAAAAATAAGTGCAACTGGCTTAAAGGTTGTTAGGCTCTGCGCAAAGTCAAGAGAGGCTGTTAGTTCCCCTGTTGAGCATCTTACACTTCATTACCAGGTTCGACACCTTGACACTTCAGACAAGAGTGAACTTCACAAATTACAGCAACTGAAGGATGAACAAGGAGAATTGTCCAGCAGTGATGAGAAGAAGTACAAGGCATTGAAGCGAGCAACGGAAAGGGAGATTGCTCAGAGTGCTGATGTCATTTGTTGCACATGTGTTGGTGCTGGAGATCCCCGACTTGCAAATTTCAGATTCCGGCAGGTACTCATTGATGAGTCTACTCAAGCAACGGAACCTGAATGTTTAATACCGTTGGTGCTTGGGGCGAAGCAGGTCATTCTAGTTGGCGACCACTGTCAACTTGGTCCTGTGATAATGTGCAAGAAAGCTGCTCGAGCTGGACTAGCGCAGTCCCTCTTTGAACGCCTTGTGTTACTTGGCGTGAAACCCATTAGGTTGCAGGTTCAATATCGTATGCATCCTGCACTTTCGGAATTCCCTTCCAATAGTTTCTATGAGGGTACACTTCAAAATGGTGTGACAATTAATGAAAGACAATCATCTGGCATTGATTTTCCATGGCCTGTTCCAAACCGTCCCATGTTCTTCTATGTCCAGATGGGACAAGAAGAGATAAGTGCAAGCGGAACATCATATCTGAACCGCACAGAAGCAGCAAATGTCGAGAAAATAGTAACTACTTTCTTGAGGAGCGGTGTGGTCCCTAGTCAGATTGGGGTGATAACACCATATGAGGGACAAAGAGCCTATATTGTGAATTATATGTCAAGAAATGGTGCTCTTAGACAGCAACTTTACAAGGAAATCGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_61949.p1 GENE.S_Transcript_61949~~S_Transcript_61949.p1 ORF type:3prime_partial len:848 (+),score=168.04,UPF1_Zn_bind|PF09416.6|4.3e-72,UPF1_Zn_bind|PF09416.6|1.7e+03,AAA_11|PF13086.2|8.5e-25,AAA_11|PF13086.2|2.4e-29,AAA_12|PF13087.2|1e-28,AAA_30|PF13604.2|4.9e+02,AAA_30|PF13604.2|1.4e-12,AAA_19|PF13245.2|1.3e-13 S_Transcript_61949:230-2770(+)
MDSQASNLYETASQPDTGNDAYTFLEFNTQVVGPDDVDDFAYPEFHELSQPPPQPSSSIRSPSSSSSAWPTPSDSVIKDVTQQQHQPQPSSEPSPSASASTSSSKAAAVEALAAGMSGLNFEETAGDEDGFVDQFGKGDFTEHACRYCGVQNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGGTILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELQLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDINHGFSVDFVWKSTSFDRMQSAMKTFAVDETSVSGYIYHHLLGHEVELQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREIAQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVILVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE

Click here to download the sequence:
Link to NCBI Protein BLAST