Transcript Information: S_Transcript_61950.p1


Annotated TAIR IDAT5G47010.1
Annotated Gene NameRNA helicase, putative
Annotated Gene Symbol(s)UPF1, LBA1, ATUPF1
Annotation TypeOrtholog
Chromosome Positionchr5:19072009-19078856 | Forward length=1254
E-Value1.8E-81
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9426668496564
Replicate 21.4708526371677
Replicate 31.3661285987852
Condition 2: 8 Hour
Replicate 11.5796585420098
Replicate 21.1600217813192
Replicate 31.5789516744431
Condition 3: 24 Hour
Replicate 12.9126511320792
Replicate 21.5109207717565
Replicate 32.241959502677


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_61950.p1 GENE.S_Transcript_61950~~S_Transcript_61950.p1 ORF type:5prime_partial len:135 (+),score=20.69,AAA_12|PF13087.2|2e-22 S_Transcript_61950:1-405(+)
CCTGTGATAATGTGCAAGAAAGCTGCTCGAGCTGGACTAGCGCAGTCCCTCTTTGAACGCCTTGTGTTACTTGGCGTGAAACCCATTAGGTTGCAGGTTCAATATCGTATGCATCCTGCACTTTCGGAATTCCCTTCCAATAGTTTCTATGAGGGTACACTTCAAAATGGTGTGACAATTAATGAAAGACAATCATCTGGCATTGATTTTCCATGGCCTGTTCCAAACCGTCCCATGTTCTTCTATGTCCAGATGGGACAAGAAGAGATAAGTGCAAGCGGAACATCATATCTGAACCGCACAGAAGCAGCAAATGTCGAGAAAATAGTAACTACTTTCTTGAGGAGCGGTGTGGTCCCTAGTCAGATGGTGTCCGGTGGGTGGCTTTCCTCATTTGCTGCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_61950.p1 GENE.S_Transcript_61950~~S_Transcript_61950.p1 ORF type:5prime_partial len:135 (+),score=20.69,AAA_12|PF13087.2|2e-22 S_Transcript_61950:1-405(+)
PVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQMVSGGWLSSFAA*

Click here to download the sequence:
Link to NCBI Protein BLAST