Transcript Information: S_Transcript_62912.p1


Annotated TAIR IDAT5G35400.2
Annotated Gene NamePseudouridine synthase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:13599416-13602240 | Reverse length=471
E-Value1.1E-30
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1296036399418
Replicate 24.8024606579935
Replicate 36.1210805105054
Condition 2: 8 Hour
Replicate 17.4914625467515
Replicate 25.4965317778639
Replicate 35.834294495329
Condition 3: 24 Hour
Replicate 14.0017566739235
Replicate 22.0026212815307
Replicate 32.9896819876754


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_62912.p1 GENE.S_Transcript_62912~~S_Transcript_62912.p1 ORF type:complete len:464 (+),score=77.14,PseudoU_synth_1|PF01416.16|4.4e-11,PseudoU_synth_1|PF01416.16|5.3e-05 S_Transcript_62912:132-1523(+)
ATGCTCATACTGACCCTTGCAAAGACCGTCGATGGACTGCCAAGTAATCTAGCTATTCGTCATCATATTCATTGTGGCATATGCCTTCATAATCCCCATCAAGATCGAATTTTGTCATCTGGGTTTCCTTCAATTTCCCTTTTTTCTTTTTTGTTTTGTTTCTATAAGGGTTTTTCTGATTCAAAAGTTTCTGTGTTTTGTTGGTTCTTTTTGTTGTGTAGGGAGTGTTACCAGTATATGTATGACAAGCCTTGGGGACCAGTAAATGAATTTTATGGGGGTTTGGTTAATGGGCACTCCTCTTTGTCTGAGTTGTTTGGAGTTAAGGGAGAAGATGACGGTGGCATTGTCAACACTTTTGATGAATATGCTCCAGAAGCCAGTCCTCCCGAAGAACAATCAAGCAGATGGGCAAGAGTGACATTTAAAATAGTAGTGTCCTACCATGGCCAACATTTTGATGGGTGGCAGAAGCAGCCTGGTTTAAACACTGTTCAGGGACTGGTTGAGAGATCTATTGGGGCATTCGTTGATGACAGGAAAGTTCAACAGCTGAAAGACAAGGGTTTACCCGTTGAAGGAATGGCTGTTGTTGCTGGGCGTACAGACAAAGGGGTTACTGCACTCAAACAAGTTTGCTCTTTCTATACTTGGAGGAAGGATGTTTTAATTGACGACATCGAACATGCAGTCAACATAGCAGCACCTGGAAAACTCCAAGTTGTATCTGTATCTCAGGTATCACGTGCATTTCACCCGAATTTTTGTGCTAAATGGAGGAGATATCTTTACGTTTTTCCATTGGCTGAAGGAGATCAAGGGAAACAGAGTGGTCAAAGACTAGAGATGAGAAATGCGTGTGTTGGTGAAAGTCATGGATGGAAGCATAATGAACAAGCTGGGGACAACACTATAGAAACGGAGGACTCACTTGATGACAAGGATAAGATTAACAGGGTGAAAAAACCAACGAGTTTCTCTGTTGCAAGAGTTGATCAACTATTGCGACATTTGGAAGGAAAATTGCTTTCTTACAGGATGTTTGCTCGAGACACCAAACCTTCGAGGAACACTGGTCCACCGACGGAGTGTTTTGTCTATCATTCTAGAGCAACTGAAGCCAGATTGCCATGCTCCAACAAGGACAAAGAAGATGCTGTCAAAGTTATGTGCATTGAGCTAGTAGCCAATCGTTTCTTACGGAGGATGGTTCGTGTGCTTGTTGCAACGGTAGTAAGGGAAGCCATCGCAGGCTCAGAAGACACCATTTTACTCAACCTGATGGAAGCTACTTGTCGACGGGCTACAGCACCTCCTGCGCCACCTGATGGTCTTTGCCTTGTAGATGTTGGTTATTCAGATTTTTATCCGAAAATATGTTTGATTCACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_62912.p1 GENE.S_Transcript_62912~~S_Transcript_62912.p1 ORF type:complete len:464 (+),score=77.14,PseudoU_synth_1|PF01416.16|4.4e-11,PseudoU_synth_1|PF01416.16|5.3e-05 S_Transcript_62912:132-1523(+)
MLILTLAKTVDGLPSNLAIRHHIHCGICLHNPHQDRILSSGFPSISLFSFLFCFYKGFSDSKVSVFCWFFLLCRECYQYMYDKPWGPVNEFYGGLVNGHSSLSELFGVKGEDDGGIVNTFDEYAPEASPPEEQSSRWARVTFKIVVSYHGQHFDGWQKQPGLNTVQGLVERSIGAFVDDRKVQQLKDKGLPVEGMAVVAGRTDKGVTALKQVCSFYTWRKDVLIDDIEHAVNIAAPGKLQVVSVSQVSRAFHPNFCAKWRRYLYVFPLAEGDQGKQSGQRLEMRNACVGESHGWKHNEQAGDNTIETEDSLDDKDKINRVKKPTSFSVARVDQLLRHLEGKLLSYRMFARDTKPSRNTGPPTECFVYHSRATEARLPCSNKDKEDAVKVMCIELVANRFLRRMVRVLVATVVREAIAGSEDTILLNLMEATCRRATAPPAPPDGLCLVDVGYSDFYPKICLIH*

Click here to download the sequence:
Link to NCBI Protein BLAST