Transcript Information: S_Transcript_62962.p1


Annotated TAIR IDAT1G14790.1
Annotated Gene NameRNA-dependent RNA polymerase 1
Annotated Gene Symbol(s)RDR1, ATRDRP1
Annotation TypeOrtholog
Chromosome Positionchr1:5094317-5097817 | Reverse length=1107
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 112.658265423642
Replicate 213.229856980015
Replicate 311.892216004306
Condition 2: 8 Hour
Replicate 124.064257984081
Replicate 220.429916694028
Replicate 324.374454612959
Condition 3: 24 Hour
Replicate 114.414914260844
Replicate 213.148624076623
Replicate 314.655147147703


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_62962.p1 GENE.S_Transcript_62962~~S_Transcript_62962.p1 ORF type:complete len:1129 (+),score=210.66,RdRP|PF05183.8|2.9e-188 S_Transcript_62962:233-3619(+)
ATGGGCAAGACAATTCAAGTCTCGGGTTTTCCTTCTACTGTTTCTGCAGAAGCAGTCAAAACATACTTGGAGCAGTATACAGGTGAAAAATCTGTTTATGCTCTGAAAATAAGGCAGTTTAAAACTGGAGGGAAAAGATCATATGCTATTGTGCAATTCACGAGGGCTGGAGAGGCAGAACGTATTTTGTCCTTAGGCTTACCACCTAAGAAACTGTGGTATGGCTCTAGCTATTTGCAGGTTCGAGTGATGGAAAGAGATATCGTGCCCAAGCCAAGAAAGTATCAGCATAAAATGACAAATGTGACGCTTCATTTTGGATGTCAGATCTCAAATGACAAGTACCTCTGGTTCTCGAAGGGACAGGATGTTTCTCTATTATTTGGCTATGGGATGAGGAAACTTTACTTCTTCTTGCGTCATATTCGCAAAGAATATAAACTTGAGCTTTCTTATGAGAGTATTTGGCAAATTGAGCTACGGCGTCCACGCAGTATTCGACTGAAATATCTTCTAATTCAGCTATTTAGGGTTCCTCAAGTTTATGAGAAAGTTGAGCATTCCTTTGGGCAACTCTTCGAAAATAATTTTTTCAGAGACGAGCAGGATGATCAATGGATCAGAACAACAGACTTCACCATAAGTTGTATTGGAGAGTCATCAGTTTTGTGTTTAGAGCTTCCATCTAACTGTCAACTTCCCAATTTTAAAGAATATTTTGTCTACTATAAGGAGGAGAATGGGCAGTTCATTGTTGAGCGTGGTTCTACCTTCTCCAACAACTTGAAACTTGTTCCAATAGTGGCACCTCCTAGAGGATCCAGCTTACCCTTTGACATCTTGTTTAAGGTAAATTTGTTGGTTCAAAATGGATGTCTAGCTGGGCCAAATTTAGATGATACTTTCTTCCGGTTGGTTGATCCTGTTAGAATTAGTAAGCCCTGCATTGAATATGCACTTGAGCGACTTTTTCAAGTAAAGGAGTGCTGCTACAATCCAGTAGGATGGCTAAGCAAGCAATACAAAAAATACCTTGAATCTTTGAGGCGTCCTGAGAAGCCGGCTATCTCCTTAGATGAGGGGTTGGTATATGTACGCAGGGTTCAAGTAACTCCATGTAAGGTGTATTTTTGCGGCCCAGAAGCTAATGTTTCCAACCGAGTACTTCGACATTATCCTGATGACATTGATAATTTCCTTCGAATTTCTTTTCTGGATGAGGATCTGGAGAAACTGCATTCAGCAGATTTATCTGCACGCCTCTCATCTGAATCAGCTGCTTTTGACAGACGAACGGAAATTGACAAAAGGATCCGTCTCACTCTCAGAAATGGAATACTAATTGGTGATAAGAGGTTTGAGTTTCTGGCCTTCTCATCCAGCCAATTACGGGATAATTCTGCCTGGATGTTTGCTTCAAGACCTGGACTGTCTGCTGCAGATATAAGAAGTTGGATGGGTGATTTTAGTGGAATTAGAAATGTAGCAAAATATGCTGCCAGACTTGGTCAATCTTTCAGCTCATCCACTGAAACTCTCACTGTTGCCAAGCATGAAGTTGAGATGATACCTGATGTGGAAAGAAACGACTATGTTTTCTCTGATGGAATTGGAAAAATATCAGCTGATTTTGCTCACAAAGTTGCGATAAAATGTGGTTTCAAAAGCTCTTCGCCTTCTTGCTTCCAAATTAGATATGGTGGATTTAAGGGTGTTGTGGCTGTTGATCCCTCGTCATCCAAGAAATTGTCATTGCGAAAGAGCATGTGCAAGTACAAATCAGAGAATGAGAAACTAGATGTGTTAGCATATAGTAAATACCAACCTTGTTACCTGAATCGTCAGTTGATAACACTTCTGTCCACTCTTGGTGTAAAAGATCGAGTATTTGAAAAGAAACAGAGAGAAGCTCTGAATCAACTGGATGCAATCCTTACAGATCCGCTGAAGGCACAAGAGGCGTTAGAGCTTATGTGTCCTGGGGAGATCACTAACATTCTCAAGGAAATGCTCAAATGCGGCTACAAGCCTGACACTGAACCATTCCTTTCAATGATGTTGCAGGCTTTTCGTTCTTCAAAGTTACAAGAATTGAGGACTAAATCAAGAATATTTGTCCCAAGGGGTAGAGCAATGATGGGATGTCTTGATGAAACTAAAGCCTTGGAATATGGTCAGGTCTTTGTTCAAGTATCTGGAGCAAGATTTAGGAATGTTGGTAATGAACTCCTTACACACGTTGGTGCTGAATATGAACCATGTAATTATGTTGTGAAAGGAAAAGTAGTTGTTGCCAAGAACCCTTGTCTGCATCCTGGTGATGTGCGTGTCCTTATGGCCGTAGATGTGCCTTCTTTGCATCACATGGTTGACTGTGTTATCTTTCCTCAGAAAGGGAACAGGCCTCATCCAAATGAATGCTCGGGTAGTGACCTTGATGGTGACATCTACTTTGTTTGTTGGGACTCAGACCTGATACCACCTCGTCAAGTTGCGCCTATGGATTACTCTCCAGCAAAATGTGAGGAATTGGATCACGATGTTACAATCGAGGAAGTGATGGAGTACTTTGCCAATTATATCATAAATGATAGCTTAGGAATCATTTCAAATGCACATACTGCCTTTGCTGATAAGGAACCTGGAAAAGCAATGAGTAGCTCTTGTATAGAGCTTGCCAAACTTTTCTCGATCGCTGTTGACTTCCCCAAAACTGGTGTGCCAGCAGTCATACCTCGAAACCTCTATGTCAAAGAGTACCCTGATTTCATGGAGAAGCCTGACAAACCGACCTATGAATCTGTTAATGTTATAGGCAAGCTCTTCCGAGAAGTTAAAGAAAGGTCCCCTCAGGCACCCTCTATAAGAAGATTCACCCTTGAAATAGCTATGCGGTCTTATGACCGAGATATGGAATATGACGGGTATGAGGATCATCTTGCTGACGCTCACTATTACAAAAGCCAGTATGACTTCAAGCTCGGGAACTTGATGGAATACTATGGGATTAAAACTGAGGCCGAAATTCTGAGTGGGAATATAATGCGAATGTCCAATTCCTTCGATAGGAGGAAGGATGTGGAGGCTATTACTATGGCCGTGAGGTCCTTGAGGAAGGAAGCTAGGACTTGGTTCAATGAAAAGGGAACTGATTCGAGCTCAGGAGCTGACAATATGTATGCCAAGGCTTCAGCTTGGTATCATGTAACTTACCACCCGAGTTATTGGGGTTCGTACAATGAGGGTATGAACCGTGATCATTTCCTTAGCTTTCCATGGTGTGTGTATGACAGGCTAATCACCATCAAGAAGAACAGAATGACTGCCAGTTCCGCAGAGTTATCGTCACTGGTGCATCGATTTGGCAAGGGATTCAGTATGAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_62962.p1 GENE.S_Transcript_62962~~S_Transcript_62962.p1 ORF type:complete len:1129 (+),score=210.66,RdRP|PF05183.8|2.9e-188 S_Transcript_62962:233-3619(+)
MGKTIQVSGFPSTVSAEAVKTYLEQYTGEKSVYALKIRQFKTGGKRSYAIVQFTRAGEAERILSLGLPPKKLWYGSSYLQVRVMERDIVPKPRKYQHKMTNVTLHFGCQISNDKYLWFSKGQDVSLLFGYGMRKLYFFLRHIRKEYKLELSYESIWQIELRRPRSIRLKYLLIQLFRVPQVYEKVEHSFGQLFENNFFRDEQDDQWIRTTDFTISCIGESSVLCLELPSNCQLPNFKEYFVYYKEENGQFIVERGSTFSNNLKLVPIVAPPRGSSLPFDILFKVNLLVQNGCLAGPNLDDTFFRLVDPVRISKPCIEYALERLFQVKECCYNPVGWLSKQYKKYLESLRRPEKPAISLDEGLVYVRRVQVTPCKVYFCGPEANVSNRVLRHYPDDIDNFLRISFLDEDLEKLHSADLSARLSSESAAFDRRTEIDKRIRLTLRNGILIGDKRFEFLAFSSSQLRDNSAWMFASRPGLSAADIRSWMGDFSGIRNVAKYAARLGQSFSSSTETLTVAKHEVEMIPDVERNDYVFSDGIGKISADFAHKVAIKCGFKSSSPSCFQIRYGGFKGVVAVDPSSSKKLSLRKSMCKYKSENEKLDVLAYSKYQPCYLNRQLITLLSTLGVKDRVFEKKQREALNQLDAILTDPLKAQEALELMCPGEITNILKEMLKCGYKPDTEPFLSMMLQAFRSSKLQELRTKSRIFVPRGRAMMGCLDETKALEYGQVFVQVSGARFRNVGNELLTHVGAEYEPCNYVVKGKVVVAKNPCLHPGDVRVLMAVDVPSLHHMVDCVIFPQKGNRPHPNECSGSDLDGDIYFVCWDSDLIPPRQVAPMDYSPAKCEELDHDVTIEEVMEYFANYIINDSLGIISNAHTAFADKEPGKAMSSSCIELAKLFSIAVDFPKTGVPAVIPRNLYVKEYPDFMEKPDKPTYESVNVIGKLFREVKERSPQAPSIRRFTLEIAMRSYDRDMEYDGYEDHLADAHYYKSQYDFKLGNLMEYYGIKTEAEILSGNIMRMSNSFDRRKDVEAITMAVRSLRKEARTWFNEKGTDSSSGADNMYAKASAWYHVTYHPSYWGSYNEGMNRDHFLSFPWCVYDRLITIKKNRMTASSAELSSLVHRFGKGFSMK*

Click here to download the sequence:
Link to NCBI Protein BLAST