Transcript Information: S_Transcript_62975.p1


Annotated TAIR IDAT1G08620.1
Annotated Gene NameTranscription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
Annotated Gene Symbol(s)PKDM7D
Annotation TypeHomolog
Chromosome Positionchr1:2737554-2743370 | Forward length=1209
E-Value3E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.2036243060977
Replicate 23.3726557285373
Replicate 32.9954762428778
Condition 2: 8 Hour
Replicate 14.6182373935192
Replicate 25.4148423459211
Replicate 34.4804010889451
Condition 3: 24 Hour
Replicate 15.1481572557451
Replicate 25.4133307905288
Replicate 33.2933242694578


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_62975.p1 GENE.S_Transcript_62975~~S_Transcript_62975.p1 ORF type:3prime_partial len:314 (+),score=36.86,JmjC|PF02373.18|3.1e-20,zf-C5HC2|PF02928.12|4.5e+03,zf-C5HC2|PF02928.12|6.9e-13 S_Transcript_62975:1769-2707(+)
ATGTTTTCCTTTTTGGATACCATATCATTCTTTTCTATGAGTGACATTCCCTCTCACCCCCCCCTCTCTTCTGCTACAAGCCTACAACTAATGGTGATTCTTTTATGTGGATTGTTAATAAATCAGACTGGTCAAGAGCATCATTTGTATAAACTGTATTATCTGAACCTGGGTGCTCCCCGAATATGGTATGGAACATCTAAATGTGATCCCTATAAATTTGAGGCAATTATGAAGAAGCCGTTTGCTGATTCTTCAGAAGAACATCTTGAGCAGCGTCATAAACTGGGAAGGCAGGTATGCCCTGCAACATTGAAATCAGAGGATGTACAAGTTTATCGTTGCATTCAGCACCCCAGAGAATTTGTTCTTTTTCTTCCTGGAGCATATCACTCAGGTTTTGATTGCGGCTTCAATTGTTCTGTGTCAGCAGTGTTTGCTCCCTTGAACTGGTTACCTTATGGGCTGAACTCCATAGAACTTTATCGTGAGCGAAGGATGAAGACAGTTATCTCTTATGATAAGGTGCTACTGAGAGTAGCTGATGAAGTTGTTAAGTCACAATGGGAATGCCTGGTGAAGGGGAAGAAAACAAAAAAAATTATGATGTGGAAAGAAGCCTCTGGAAAGGATGGTATATTAGCAAAGTCTCTGAGGACCAGGATTAGGTCAGAGTCGAGATGCAGGGAATATTTGTTGTCTGGAAACCAGTCAAGAAAGATGGACAAGTCATTTGATGGGGTTGACCAGAAAAGGGAATGTGTCACATGTTATTATGATCTATTTTTATCTGCAGTGAGCTGTCCATGTAGCCCGGATAAGTTTTCATGTCTCAAGCATGCGAAGCATCTCTGTTGCCCCTGGAATGTCAAAGTTTTTCTGTTCCGCTACCTGATTAGTGAGTTAAATATCCTTTTAGAAGCCGTGGAAGGCAAGTTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_62975.p1 GENE.S_Transcript_62975~~S_Transcript_62975.p1 ORF type:3prime_partial len:314 (+),score=36.86,JmjC|PF02373.18|3.1e-20,zf-C5HC2|PF02928.12|4.5e+03,zf-C5HC2|PF02928.12|6.9e-13 S_Transcript_62975:1769-2707(+)
MFSFLDTISFFSMSDIPSHPPLSSATSLQLMVILLCGLLINQTGQEHHLYKLYYLNLGAPRIWYGTSKCDPYKFEAIMKKPFADSSEEHLEQRHKLGRQVCPATLKSEDVQVYRCIQHPREFVLFLPGAYHSGFDCGFNCSVSAVFAPLNWLPYGLNSIELYRERRMKTVISYDKVLLRVADEVVKSQWECLVKGKKTKKIMMWKEASGKDGILAKSLRTRIRSESRCREYLLSGNQSRKMDKSFDGVDQKRECVTCYYDLFLSAVSCPCSPDKFSCLKHAKHLCCPWNVKVFLFRYLISELNILLEAVEGKL

Click here to download the sequence:
Link to NCBI Protein BLAST