Transcript Information: S_Transcript_63430.p1


Annotated TAIR IDAT4G10340.1
Annotated Gene Namelight harvesting complex of photosystem II 5
Annotated Gene Symbol(s)LHCB5
Annotation TypeOrtholog
Chromosome Positionchr4:6408200-6409496 | Forward length=280
E-Value2.7E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12125.4023504442
Replicate 22644.5189699119
Replicate 33011.8712884729
Condition 2: 8 Hour
Replicate 11281.6713000671
Replicate 21301.5909348883
Replicate 31278.490802034
Condition 3: 24 Hour
Replicate 12665.3901007229
Replicate 22676.7755010712
Replicate 32753.0133648519


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_63430.p1 GENE.S_Transcript_63430~~S_Transcript_63430.p1 ORF type:3prime_partial len:139 (+),score=34.82,Chloroa_b-bind|PF00504.17|5.4e-15 S_Transcript_63430:492-905(+)
ATGGCTTCATTGGCGGCAACGACGGCGGCAGCTTGTCTAGGAAAGTCAGAGATATTGGGAAACCCACTCAACTTGAGAAATGCCTCAACTGCCCCTAGTACTACAGCTGCTCCTAGCGTTGGTTCTTCAAAGATAGTTGCCCTTTTTGGTAAGAAGAAGGCAGCTGCTCCACCCCCAAAGGCTAAGCCAGCAGCTGTTGCCCCTGTTGATGAGGAGCTTGCTAAATGGTATGGCCCTGACCGTAGGATCTTCTTGCCCGAAGGCCTTTTGGACCGCTCCGAGATCCCTGAGTACCTCACCGGAGAAGTCCCCGGAGACTACGGTTATGATCCTTTTGGTCTGAGCAAGAAGCCAGAGAACTTGGCCAAGTACCGTGCATATGAGCTTATCCACGCCCGGTGGGCTATGCTTGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_63430.p1 GENE.S_Transcript_63430~~S_Transcript_63430.p1 ORF type:3prime_partial len:139 (+),score=34.82,Chloroa_b-bind|PF00504.17|5.4e-15 S_Transcript_63430:492-905(+)
MASLAATTAAACLGKSEILGNPLNLRNASTAPSTTAAPSVGSSKIVALFGKKKAAAPPPKAKPAAVAPVDEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPENLAKYRAYELIHARWAMLG

Click here to download the sequence:
Link to NCBI Protein BLAST