Transcript Information: S_Transcript_63441.p1


Annotated TAIR IDAT5G11580.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:3718913-3721125 | Forward length=553
E-Value2E-127
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0382707541221
Replicate 22.3788631446792
Replicate 31.9495492688795
Condition 2: 8 Hour
Replicate 12.6600381156678
Replicate 22.2702933080484
Replicate 31.5322173754109
Condition 3: 24 Hour
Replicate 13.463776451997
Replicate 23.8332028036106
Replicate 33.9992670832636


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_63441.p1 GENE.S_Transcript_63441~~S_Transcript_63441.p1 ORF type:3prime_partial len:473 (+),score=73.67,RCC1|PF00415.14|0.65,RCC1|PF00415.14|2.3e-14,RCC1|PF00415.14|1.6e-07,RCC1|PF00415.14|0.0066,RCC1|PF00415.14|9.3e-14,RCC1|PF00415.14|1e-07,RCC1|PF00415.14|0.0012,RCC1_2|PF13540.2|5.2e-09,RCC1_2|PF13540.2|2.6e-11,RCC1_2|PF13540.2|23,RCC1_2|PF13540.2|6.8e-07,RCC1_2|PF13540.2|0.31,RCC1_2|PF13540.2|0.001,RCC1_2|PF13540.2|12 S_Transcript_63441:110-1417(+)
ATGGCTGGCCGGAACCCTAGTATGAAGGTCGTAGCAGTCGCCGCCGGCGAGGCTCACACTCTCGCTCTCACCGGAGACGGAAAGGTTTACTCATGGGGCAGAGGTACTTTTGGCCGTTTGGGTAACGGGTCTGATTCTGATGAGAATTATCCGGTGCCCGTCAAATTTGATAATATTAATAGTAATAATGGTGGTGGTAAAGCTCTCAAATTTGTTGGGGTTGCTTCTGGTGCTTATCACAGCCTTGCACTTGCTGATGATGGAACTGTCTGGTGCTGGGGCTACAACACCTATGGTCAACTTGGATTTGATGGAGACAATGTGTCGGTGCCCTGTCAATTAGATAATTTTGTTGAGTTGGAGTCTTCCCAGTCTCTTGGAGATGACAGAAAAGGGAAGGGTGAATCCGAATTGAAGGTTTCTTCTATCAAAGCTGGTGGAATGATGTCATTAGCAATTGATAACCTTGGGACTCTTTGGATGTGGGGCAACTGCCCTCAGGTCAGTAGTTCCTCTGATGACGCATTCTCAATTTCAAGCATTTCATCCCCAATTCCCATTCGGCATTTCCATGGTCGCACAGTTGTCAAGGTAGCATGTGGGAATGAGCATGTTGTTGCCTTAGTCAGTGGTGGGGAAACATACAATGCTGGTGATCTTTTATGCTACACCTGGGGTAACAATAAGCACGGCCAACTGGGTTTGGGTGACACAAAGAGCAGATCACAGCCCCATGTTGTTACAATGTTCAGCGAGGAATCTGATTGGGAAGTGTACGAGGTGGCATGTGGTGGACAGCACACTGCTGTGCTCACCCTCAAAAAGAGGTCCAGTGATGCATTAGAGAGTGTTTGCTGGACTTTCGGCCTTGGAGAAAATGGTCAACTTGGACATGCTACCTCTCGAGATGTATTGTGCCCTGAACCTGTTGAACAACTGCCCAAACATGATTATTTTGTTTCTGTAGATTGCGGGCTATTTCACACCAGTGTAGTTTCATCCGCTGGGGAAGTGTGGTCATGGGGCATGGAGAGGGGTCTCGGTCTCTGCCCTGATGTTAGTTTTACTGCGACCTACCAAGGAGATGCACTTTTACCATTGTTAATCCTATGTAATGGGCCATGTGGCCCAAAGTTTCCTACGCCTGTCCAAGTTGCATGTGGGGCAGCCCACACTGTCCTTGCTGCGGATGATGGTTATAGGCTACGTTGCACGGAAACGCCTGGGAGGGCACGTCTCCCGTACCAGAAACGGTGCGGGTACGGGAAACACGGGGAAACGCGGGGGAAACGTTTCCTGAAAGTCAAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_63441.p1 GENE.S_Transcript_63441~~S_Transcript_63441.p1 ORF type:3prime_partial len:473 (+),score=73.67,RCC1|PF00415.14|0.65,RCC1|PF00415.14|2.3e-14,RCC1|PF00415.14|1.6e-07,RCC1|PF00415.14|0.0066,RCC1|PF00415.14|9.3e-14,RCC1|PF00415.14|1e-07,RCC1|PF00415.14|0.0012,RCC1_2|PF13540.2|5.2e-09,RCC1_2|PF13540.2|2.6e-11,RCC1_2|PF13540.2|23,RCC1_2|PF13540.2|6.8e-07,RCC1_2|PF13540.2|0.31,RCC1_2|PF13540.2|0.001,RCC1_2|PF13540.2|12 S_Transcript_63441:110-1417(+)
MAGRNPSMKVVAVAAGEAHTLALTGDGKVYSWGRGTFGRLGNGSDSDENYPVPVKFDNINSNNGGGKALKFVGVASGAYHSLALADDGTVWCWGYNTYGQLGFDGDNVSVPCQLDNFVELESSQSLGDDRKGKGESELKVSSIKAGGMMSLAIDNLGTLWMWGNCPQVSSSSDDAFSISSISSPIPIRHFHGRTVVKVACGNEHVVALVSGGETYNAGDLLCYTWGNNKHGQLGLGDTKSRSQPHVVTMFSEESDWEVYEVACGGQHTAVLTLKKRSSDALESVCWTFGLGENGQLGHATSRDVLCPEPVEQLPKHDYFVSVDCGLFHTSVVSSAGEVWSWGMERGLGLCPDVSFTATYQGDALLPLLILCNGPCGPKFPTPVQVACGAAHTVLAADDGYRLRCTETPGRARLPYQKRCGYGKHGETRGKRFLKVK

Click here to download the sequence:
Link to NCBI Protein BLAST