Transcript Information: S_Transcript_63445.p1


Annotated TAIR IDAT5G11580.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3718913-3721125 | Forward length=553
E-Value5.3E-184
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.7523754453074
Replicate 24.7858545677906
Replicate 34.0806053807533
Condition 2: 8 Hour
Replicate 12.9605747945694
Replicate 22.8146794384038
Replicate 32.4506289003558
Condition 3: 24 Hour
Replicate 15.3072168133331
Replicate 25.5061754805877
Replicate 34.1580810732946


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_63445.p1 GENE.S_Transcript_63445~~S_Transcript_63445.p1 ORF type:3prime_partial len:461 (+),score=76.14,RCC1|PF00415.14|0.63,RCC1|PF00415.14|6.2e-14,RCC1|PF00415.14|1.5e-07,RCC1|PF00415.14|0.0063,RCC1|PF00415.14|1.4e-14,RCC1|PF00415.14|1e-07,RCC1|PF00415.14|0.00043,RCC1|PF00415.14|0.022,RCC1_2|PF13540.2|5e-09,RCC1_2|PF13540.2|2.5e-11,RCC1_2|PF13540.2|22,RCC1_2|PF13540.2|6.6e-07,RCC1_2|PF13540.2|0.49,RCC1_2|PF13540.2|0.001,RCC1_2|PF13540.2|0.018 S_Transcript_63445:110-1381(+)
ATGGCTGGCCGGAACCCTAGTATGAAGGTCGTAGCAGTCGCCGCCGGCGAGGCTCACACTCTCGCTCTCACCGGAGACGGAAAGGTTTACTCATGGGGCAGAGGTACTTTTGGCCGTTTGGGTAACGGGTCTGATTCTGATGAGAATTATCCGGTGCCCGTCAAATTTGATCATATTAATAATAATAATGGTGGTGGTACAGCTCTCAAGTTTGTTGGGGTTGCTTCTGGTGCTTATCACAGCCTTGCACTTGCTGATGATGGAACTGTCTGGTGCTGGGGCTACAACACCTATGGTCAACTTGGATTTGATGGAGACAATGTGTCGGTGCCCTGTCAATTAGATAATTTTGTTGAGTTGGAGTCTTCCCAGTCTCTTGGAGATGACAGAAAAGGGAAGGGTGAATCCGAATTGAAGGTTTCTTCTATCAAAGCTGGTGGAATGATGTCATTAGCAATTGATAACCTTGGGACTCTTTGGATGTGGGGCAACTGCCCTCAGGTCAGTAGTTCCTCTGATGACGCATTCTCAATTTCAAGCATTTCATCCCCAATTCCCATTCGGCATTTCCATGGTCGCACAGTTGTCAAGGTAGCATGTGGGAATGAGCATGTTGTTGCCTTAGTCAGTGGTGGGGAAACATACAATGCTGGTGATCTTTTATGCTACACCTGGGGTAACAATAAGCACGGCCAACTGGGTTTGGGCGACACAGAGAGCAGATCACAGCCCCAAGTTGTTACAATGTTCAGCGAGGAATCTGATTGGGAAGTGTACGAGGTGGCATGTGGTGGACAGCACACTGCTATGCTCACCCGCAAAAAGAGGTGCAGTGATGCATTAGAGAGCGTTTGCTGGACTTTCGGCCTCGGAGAAAATGGTCAACTTGGACATGCTACCTCTCGAGATGTATTGTGCCCTGAACCTGTTGAACAACTGCCCAAACATGATTATTTTGTTTCTGTAGATTGCGGGCTATTTCACACCAGTGTAGTTTCATCCGCTGGGGAAGTGTGGTCATGGGGCATGGAGAGGGGTCTCGGTCTCTGCCCTGATGTTAGTTTTACTGCGACCTACCAAGGAGATGCACTTTTACCATTGTTAATCCCATGTAATGGGGCATGTGGTCCAAAGTTTACTACGCCTGTCCAAGTTGCATGTGGGGCAGCCCACACTGTCCTTGCTGCGGATGATGGTTATAGGCTATGGTCGTGGGGGCGAGGAAGAAGTGGAGTTCTCGGAACTGGAAATTTGGATGATTCTTACTCTCCC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_63445.p1 GENE.S_Transcript_63445~~S_Transcript_63445.p1 ORF type:3prime_partial len:461 (+),score=76.14,RCC1|PF00415.14|0.63,RCC1|PF00415.14|6.2e-14,RCC1|PF00415.14|1.5e-07,RCC1|PF00415.14|0.0063,RCC1|PF00415.14|1.4e-14,RCC1|PF00415.14|1e-07,RCC1|PF00415.14|0.00043,RCC1|PF00415.14|0.022,RCC1_2|PF13540.2|5e-09,RCC1_2|PF13540.2|2.5e-11,RCC1_2|PF13540.2|22,RCC1_2|PF13540.2|6.6e-07,RCC1_2|PF13540.2|0.49,RCC1_2|PF13540.2|0.001,RCC1_2|PF13540.2|0.018 S_Transcript_63445:110-1381(+)
MAGRNPSMKVVAVAAGEAHTLALTGDGKVYSWGRGTFGRLGNGSDSDENYPVPVKFDHINNNNGGGTALKFVGVASGAYHSLALADDGTVWCWGYNTYGQLGFDGDNVSVPCQLDNFVELESSQSLGDDRKGKGESELKVSSIKAGGMMSLAIDNLGTLWMWGNCPQVSSSSDDAFSISSISSPIPIRHFHGRTVVKVACGNEHVVALVSGGETYNAGDLLCYTWGNNKHGQLGLGDTESRSQPQVVTMFSEESDWEVYEVACGGQHTAMLTRKKRCSDALESVCWTFGLGENGQLGHATSRDVLCPEPVEQLPKHDYFVSVDCGLFHTSVVSSAGEVWSWGMERGLGLCPDVSFTATYQGDALLPLLIPCNGACGPKFTTPVQVACGAAHTVLAADDGYRLWSWGRGRSGVLGTGNLDDSYSP

Click here to download the sequence:
Link to NCBI Protein BLAST