Transcript Information: S_Transcript_63452.p1


Annotated TAIR IDAT3G52660.1
Annotated Gene NameRNA-binding (RRM/RBD/RNP motifs) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:19522598-19524735 | Forward length=471
E-Value3E-210
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 147.401448819245
Replicate 246.127718380925
Replicate 345.286433799589
Condition 2: 8 Hour
Replicate 149.405085752504
Replicate 251.630405134743
Replicate 343.50405196248
Condition 3: 24 Hour
Replicate 148.431894714022
Replicate 241.133608199065
Replicate 339.583350827958


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_63452.p1 GENE.S_Transcript_63452~~S_Transcript_63452.p1 ORF type:5prime_partial len:562 (+),score=189.10,RRM_1|PF00076.18|4.3e-18,RRM_1|PF00076.18|3.7e-10,RRM_1|PF00076.18|6.1e-16,RRM_6|PF14259.2|1.6e-13,RRM_6|PF14259.2|1.5e-07,RRM_6|PF14259.2|7.8e-12,RRM_5|PF13893.2|0.0012,RRM_5|PF13893.2|1.5,RRM_5|PF13893.2|3.2e-05,RRM_7|PF16367.1|0.0079,RRM_7|PF16367.1|13,RRM_7|PF16367.1|0.16,RRM_occluded|PF16842.1|0.0099,RRM_occluded|PF16842.1|0.027 S_Transcript_63452:3-1688(+)
ACCAACAACTTCACTATTTCTCTTTGGCTCAAAAAAACAACTTCACTATTTCTAGGGTTTTCTTCTCCTCTTACACTCATACAAAATATCTCCTCTCTATCGAAGGCGTTAGCGGGCTTTTCTTCTTCCCCTTACTCTTTCAAATCCAAATCCCTCTTTTCTCTTTATCCTGCAAGCCTACCAGATCAGATACATAAGATGCCGAGAACAAGATCTGCTGCTGCCGCAAAGGTAGATGTAGCTGAGAAGCTCACTGAGCCAGAAAAGCCCACTGTCTCTGAAGAGAAGGTGGATTTGGATGGAGAAAATGATCCTGAAGAAACATTAGAGGAGGAGGTAGAATATGAAGAAGTGGAAGAGGAGGTGGAGGAAGAGGTAGAGGAAGAGGAAGAGGTAGAAGAGGAGGTAGAGGAAGAGGAGGAGGAAGATGAAGAGGAAGAGGAGGAGGAAGCTGATGTTGCTGAGAAGGATGCTGATGTTGAAATGAAAGAATCAAGTGAAGGTGAGAAGAAAAAACATGCCGAGCTTCTTGCACTTCCTCCTCATGGATCAGAGGTGTTTCTTGGTGGCATACCCCACGATGCTACTGAAGCTGACCTGAGGGGATTTTGTGAATCTGTGGGAGAGGTCATAGAGGTCAGGATAATGAAAGGCAAAGAACCAGGTGAAAACAAAGGCTATGCTTTTGTGATGTTCAGGACCAAGGAATTGGCCTCTAAGGCAATGGAAAAGTTGAATAACACTGAGCTAAAGGGCAAGAAAGTAAAGTGTTCATCATCACAAGCGAAGCATAAGCTTTTTATTGGTAATGTCCCCAAGAGCTGGGGGGAGGAGGACTTGAGAAAAGTTGTTTCAGAGGTTGGGCCTGGTGTGAATGCAATCGAACTCTTGAAGGACCCACAAAATCCCAGTCGTAATCGGGGTTTTGCGTTCATTGAGTACTACAATCATGCTTGTGCAGAGTATTCAAGACAGAAAATGTCAAATGCAGATTTCAAGCTTGCTGATAATTCTCCTACAGTGAGTTGGGCTGATCCAAAGAATGCAGAATCTTCTGCTGCATCCCAGGTTAAGGCAGTGTATGTAAAGAATCTGCCTAGAGATGTTACTCAAGACAATTTAAAGGAGCTTTTTGGGCGCCATGGAAAAATTACGAAAGTTGTTCTACCACCTGCTAAAGCTGGGCAGGAGAACAGCAGGTTTGGCTTTGTTCACTTTTCAGAAAGATCCAGTGCTATGAAAGCTCTGAAGAATACTGAGAGATATGAACTTGATGGTCAAGTTTTGGACTGTTCTCTTGCAAAGCCGCAGGCTGACCAAAAGTCATCTGGAGGATCCAATTCGCAGAAATCAGCTTTGCTTCCTGGGTACCCTCCTCGTGTTGGTTATGGCATGGTTGGCAGTGGATTTGGAGCTCTTGGTGCAGGATATGCTGCTCCAGGCTTAGCACAACCGCTACTTTATGGTGGCCAGGGGGCTGGTCCTGCTGGAATGGCAATGGTGCCAATGCTTCTACCAGATGGAAGGATTGGATATGTATTGCAACAACCTGGAATGCAACCACATACCCCTCCCCTGCAACATAGAGGTGGCAGAGGGAGTGGTGGTAGAGGTGGTGGGTCTTCTAGTGGGGGGAAGCGTGGTAATGATGGTGGTCGAGGACGGAGCAGATACAATCCTTACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_63452.p1 GENE.S_Transcript_63452~~S_Transcript_63452.p1 ORF type:5prime_partial len:562 (+),score=189.10,RRM_1|PF00076.18|4.3e-18,RRM_1|PF00076.18|3.7e-10,RRM_1|PF00076.18|6.1e-16,RRM_6|PF14259.2|1.6e-13,RRM_6|PF14259.2|1.5e-07,RRM_6|PF14259.2|7.8e-12,RRM_5|PF13893.2|0.0012,RRM_5|PF13893.2|1.5,RRM_5|PF13893.2|3.2e-05,RRM_7|PF16367.1|0.0079,RRM_7|PF16367.1|13,RRM_7|PF16367.1|0.16,RRM_occluded|PF16842.1|0.0099,RRM_occluded|PF16842.1|0.027 S_Transcript_63452:3-1688(+)
TNNFTISLWLKKTTSLFLGFSSPLTLIQNISSLSKALAGFSSSPYSFKSKSLFSLYPASLPDQIHKMPRTRSAAAAKVDVAEKLTEPEKPTVSEEKVDLDGENDPEETLEEEVEYEEVEEEVEEEVEEEEEVEEEVEEEEEEDEEEEEEEADVAEKDADVEMKESSEGEKKKHAELLALPPHGSEVFLGGIPHDATEADLRGFCESVGEVIEVRIMKGKEPGENKGYAFVMFRTKELASKAMEKLNNTELKGKKVKCSSSQAKHKLFIGNVPKSWGEEDLRKVVSEVGPGVNAIELLKDPQNPSRNRGFAFIEYYNHACAEYSRQKMSNADFKLADNSPTVSWADPKNAESSAASQVKAVYVKNLPRDVTQDNLKELFGRHGKITKVVLPPAKAGQENSRFGFVHFSERSSAMKALKNTERYELDGQVLDCSLAKPQADQKSSGGSNSQKSALLPGYPPRVGYGMVGSGFGALGAGYAAPGLAQPLLYGGQGAGPAGMAMVPMLLPDGRIGYVLQQPGMQPHTPPLQHRGGRGSGGRGGGSSSGGKRGNDGGRGRSRYNPY*

Click here to download the sequence:
Link to NCBI Protein BLAST