Transcript Information: S_Transcript_63511.p1


Annotated TAIR IDAT1G60900.1
Annotated Gene NameU2 snRNP auxilliary factor, large subunit, splicing factor
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:22424008-22427806 | Forward length=589
E-Value3.3E-191
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.9105583317872
Replicate 27.1307911000808
Replicate 35.7060398932687
Condition 2: 8 Hour
Replicate 17.1870099963818
Replicate 27.7250858562592
Replicate 37.8315130703384
Condition 3: 24 Hour
Replicate 16.3965680939309
Replicate 27.3250440730183
Replicate 35.9919774001104


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_63511.p1 GENE.S_Transcript_63511~~S_Transcript_63511.p1 ORF type:3prime_partial len:362 (+),score=84.73,RRM_1|PF00076.18|0.00032,RRM_1|PF00076.18|1.8e-18,RRM_1|PF00076.18|0.62,RRM_6|PF14259.2|0.0023,RRM_6|PF14259.2|2.3e-05,RRM_6|PF14259.2|2e+03,RRM_5|PF13893.2|1.8e+03,RRM_5|PF13893.2|0.00027,RRM_5|PF13893.2|0.056,RRM_5|PF13893.2|88 S_Transcript_63511:2886-3968(+)
ATGATTCTCTTAGATAAAAGCCTGGTTTTGACTGTCCCTCCTCTACCTCTTTTTCATGCTTTAATTTTCTTGTATTTCCTGCCTTATGGTTCATGCGTTTTCCTGTTTTTGTTTGTTGGGTCTTCTTTACTGACTGCCTTTGATCGGATCACTGCAACCACACTTTTTTCCCCATTCGGTAACCAGTCTGTCGCAACATTCTTTAGTCACGTTATGGCTGCAATCGGGGGCAATACTGCTGGACCAGGTGATGCTGTTGTCAATGTCTATATAAATCATGAAAAGAAGTTTGCTTTTGTGGAGATGAGGTCCGTGGAGGAGGCTAGCAATGCTATGGCATTGGATGGCATTATATTTGAGGGCACACCTGTCAAGGTGAGACGGCCTAGTGATTACAATCCATCCCTTGCTGCAACACTTGGTCCCAGCCAACCCAATCCAAATCTGAACCTTGCTGCCGTTGGGTTAACTCCTGGATCAGCTGGCGGACTTGAGGGCCCTGATCGTATTTTTGTAGGTGGGCTACCGTATTATTTCACTGAAGCGCAGATCCGGGAGCTACTTGAATCTTTTGGGCCCCTTCGGGGATTTGATCTTGTGAAGGATAGAGAGACTGGAAACTCTAAAGGCTATGCCTTTTGTGTTTACCAAGATCCCTCTGTAACTGATGTAGCTTGTGCTGCTCTGAATGGAATTAAAATGGGTGATAAAACACTCACTGTCAGACGTGCTAATCAGGGAGCTGCGCAACCTAAGCCTGAGCAAGAGATTGTTCTACAACATGCACAACAACAAATAATGCTGCAGAAGCTCATGTTTCAACCTGGAGCACTTCCCACCAAGGTTGTGTGCTTAACACAAGTGGTTACTGCTGATGATCTTAGAGATGATGATGAGTATCAAGACATAATGGTTGACATGAAAGAGGAGGGTGAGAAATTTGGTTCTTTGATTAAGGTTGTCATCCCACGGCCAGGACCCAATGGAGAACTTGCCCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGATACAGATGGTTCTTCAAGAGCTCGAGCTGGAATGAATGGTAGGAAATTTGGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_63511.p1 GENE.S_Transcript_63511~~S_Transcript_63511.p1 ORF type:3prime_partial len:362 (+),score=84.73,RRM_1|PF00076.18|0.00032,RRM_1|PF00076.18|1.8e-18,RRM_1|PF00076.18|0.62,RRM_6|PF14259.2|0.0023,RRM_6|PF14259.2|2.3e-05,RRM_6|PF14259.2|2e+03,RRM_5|PF13893.2|1.8e+03,RRM_5|PF13893.2|0.00027,RRM_5|PF13893.2|0.056,RRM_5|PF13893.2|88 S_Transcript_63511:2886-3968(+)
MILLDKSLVLTVPPLPLFHALIFLYFLPYGSCVFLFLFVGSSLLTAFDRITATTLFSPFGNQSVATFFSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGTPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDPSVTDVACAALNGIKMGDKTLTVRRANQGAAQPKPEQEIVLQHAQQQIMLQKLMFQPGALPTKVVCLTQVVTADDLRDDDEYQDIMVDMKEEGEKFGSLIKVVIPRPGPNGELAPGVGKVFLEYADTDGSSRARAGMNGRKFG

Click here to download the sequence:
Link to NCBI Protein BLAST