Transcript Information: S_Transcript_63512.p1


Annotated TAIR IDAT1G60900.1
Annotated Gene NameU2 snRNP auxilliary factor, large subunit, splicing factor
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:22424008-22427806 | Forward length=589
E-Value6.1E-291
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.441537875352
Replicate 213.093524837218
Replicate 312.986899456328
Condition 2: 8 Hour
Replicate 116.100476174097
Replicate 217.134156308466
Replicate 317.292529726727
Condition 3: 24 Hour
Replicate 113.003850789319
Replicate 213.326814792625
Replicate 312.450809579295


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_63512.p1 GENE.S_Transcript_63512~~S_Transcript_63512.p1 ORF type:3prime_partial len:551 (+),score=134.48,RRM_1|PF00076.18|0.25,RRM_1|PF00076.18|0.00052,RRM_1|PF00076.18|3.4e-18,RRM_1|PF00076.18|1.1,RRM_6|PF14259.2|9e-06,RRM_6|PF14259.2|4.3e-05,RRM_6|PF14259.2|3.7e+03,RRM_5|PF13893.2|0.00047,RRM_5|PF13893.2|0.1,RRM_5|PF13893.2|1.6e+02,RRM_7|PF16367.1|2,RRM_7|PF16367.1|0.0015 S_Transcript_63512:347-1996(+)
ATGGCGGATTACCAGAATGAACCTGATAACTACGGGTCGTCACCTCAACCTTTGGAAAATGATCATGGCCTTGATGACTATAATGACGCCAAATCTCAGCATGGTTCTCGTGACTATGAGAGGGATTCTTCAAAAAGTAGAGAAAGAGATCGGGAGAAGGGGCGAGACCGAGATAGGGAAAGAGACAAGGACAGGGAGAAGGGGCGAGACAGAGATAAGGATCGGGAGAGGGACAAAGAACGTAGTCGAGATAGAGATCGCGATCGTGATCGTGATCGACACAGAGATCGGCATAGGGACAGAATTGATAGGAGTGAAAGACGCAGAGATAGAGAGGATGATGATGATTATTCTAGAAGCCGGGACTATGACAGACGTAGAGACTATGACCGCGAAAGAGATGAAAGGCGTAGGCACAGATCTCGTTCAAGGGGAAGATCTGAGCACAGGTCATCCGAACACAGGTCAAAGTCAAGGTCACGATCCCGTTCTCGTTCCAAAAGCAAAAGAATAAGCGGGTTCGATATGGCACCTCCTGCTTCTGCTATGCTAACTACTGCAACAGCCTTCACAGGTCAGATTCCTGGAGCAGCTCCAGCCATTCCTGGAATGTTCCCCAACATGTTTCCATTGGCTTCTGGACAGCAGTTAGGAGCTATTCCTGTTATGCCTGTGCAGGCTATGACTCAGCAGGCTACTAGGCATGCTCGGCGAGTATATGTTGGAGGGCTTCCCCCTACTGCTAATGAACAGTCTGTCGCAACATTCTTTAGTCACGTTATGGCTGCAATCGGGGGCAATACTGCTGGACCAGGTGATGCTGTTGTCAATGTCTATATAAATCATGAAAAGAAGTTTGCTTTTGTGGAGATGAGGTCCGTGGAGGAGGCTAGCAATGCTATGGCATTGGATGGCATTATATTTGAGGGCACACCTGTCAAGGTGAGACGGCCTAGTGATTACAATCCATCCCTTGCTGCAACACTTGGTCCCAGCCAACCCAATCCAAATCTGAACCTTGCTGCCGTTGGGTTAACTCCTGGATCAGCTGGCGGACTTGAGGGCCCTGATCGTATTTTTGTAGGTGGGCTACCGTATTATTTCACTGAAGCGCAGATCCGGGAGCTACTTGAATCTTTTGGGCCCCTTCGGGGATTTGATCTTGTGAAGGATAGAGAGACTGGAAACTCTAAAGGCTATGCCTTTTGTGTTTACCAAGATCCCTCTGTAACTGATGTAGCTTGTGCTGCTCTGAATGGAATTAAAATGGGTGATAAAACACTCACTGTCAGACGTGCTAATCAGGGAGCTGCGCAACCTAAGCCTGAGCAAGAGATTGTTCTACAACATGCACAACAACAAATAATGCTGCAGAAGCTCATGTTTCAACCTGGAGCACTTCCCACCAAGGTTGTGTGCTTAACACAAGTGGTTACTGCTGATGATCTTAGAGATGATGATGAGTATCAAGACATAATGGTTGACATGAAAGAGGAGGGTGAGAAATTTGGTTCTTTGATTAAGGTTGTCATCCCACGGCCAGGACCCAATGGAGAACTTGCCCCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGATACAGATGGTTCTTCAAGAGCTCGAGCTGGAATGAATGGTAGGAAATTTGGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_63512.p1 GENE.S_Transcript_63512~~S_Transcript_63512.p1 ORF type:3prime_partial len:551 (+),score=134.48,RRM_1|PF00076.18|0.25,RRM_1|PF00076.18|0.00052,RRM_1|PF00076.18|3.4e-18,RRM_1|PF00076.18|1.1,RRM_6|PF14259.2|9e-06,RRM_6|PF14259.2|4.3e-05,RRM_6|PF14259.2|3.7e+03,RRM_5|PF13893.2|0.00047,RRM_5|PF13893.2|0.1,RRM_5|PF13893.2|1.6e+02,RRM_7|PF16367.1|2,RRM_7|PF16367.1|0.0015 S_Transcript_63512:347-1996(+)
MADYQNEPDNYGSSPQPLENDHGLDDYNDAKSQHGSRDYERDSSKSRERDREKGRDRDRERDKDREKGRDRDKDRERDKERSRDRDRDRDRDRHRDRHRDRIDRSERRRDREDDDDYSRSRDYDRRRDYDRERDERRRHRSRSRGRSEHRSSEHRSKSRSRSRSRSKSKRISGFDMAPPASAMLTTATAFTGQIPGAAPAIPGMFPNMFPLASGQQLGAIPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGTPVKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDPSVTDVACAALNGIKMGDKTLTVRRANQGAAQPKPEQEIVLQHAQQQIMLQKLMFQPGALPTKVVCLTQVVTADDLRDDDEYQDIMVDMKEEGEKFGSLIKVVIPRPGPNGELAPGVGKVFLEYADTDGSSRARAGMNGRKFG

Click here to download the sequence:
Link to NCBI Protein BLAST