Transcript Information: S_Transcript_63645.p1


Annotated TAIR IDAT2G18790.1
Annotated Gene Namephytochrome B
Annotated Gene Symbol(s)PHYB, HY3, OOP1
Annotation TypeOrtholog
Chromosome Positionchr2:8140079-8144151 | Forward length=1172
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 118.063868979985
Replicate 217.005920092562
Replicate 314.786830877648
Condition 2: 8 Hour
Replicate 114.493716604919
Replicate 211.977848165517
Replicate 315.053138397146
Condition 3: 24 Hour
Replicate 122.05753279891
Replicate 219.835849246909
Replicate 322.052548559517


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_63645.p1 GENE.S_Transcript_63645~~S_Transcript_63645.p1 ORF type:complete len:1130 (+),score=280.14,PHY|PF00360.16|4.8e-59,PAS|PF00989.20|6.7e+02,PAS|PF00989.20|4.5e-22,PAS|PF00989.20|1.6e-23,PAS_2|PF08446.7|3e-42,GAF|PF01590.22|2.2e-34,PAS_9|PF13426.2|1.6,PAS_9|PF13426.2|2.5e-05,PAS_9|PF13426.2|0.12,HATPase_c|PF02518.22|36,HATPase_c|PF02518.22|3.4e-10,PAS_4|PF08448.6|4.8e+03,PAS_4|PF08448.6|3.4e-07,PAS_4|PF08448.6|12,HisKA|PF00512.21|1.5e+04,HisKA|PF00512.21|5e-09,HisKA|PF00512.21|1.8e+03,PAS_8|PF13188.2|6.6,PAS_8|PF13188.2|1.4,PAS_8|PF13188.2|1 S_Transcript_63645:344-3733(+)
ATGGCTTCAGGTACTAAGGCATCAAATGCAAGTACAAGTAATAATAATGCAAGAATGAGCAAAAATAACATAAACCCATCAGATTCAATCAGCAAACAAATAGCTCAATACACAGAGGATGCTCGGTTACATGCTGTATTTGAGCAATCTGGTGAATCTGGTAAGTCTTTTGATTACTCACAGTCAGTTAGAACAACTACACAATCTGTTCCTGAGCTACAAATCACTGCTTATTTGTCTAAAATTCAAAGGGGTGGAAATATTCAGCCTTTTGGATGTATGATTGCTATTGATGAGACTAGTTTTAGGGTCATTGCTTTTAGTCAAAATGCTTTAGAAATGTTGGGTTATAACCCTCAAAGTGTGCCTAATTTTGAGGAAAGATTAGAGCTTTTGACTATTGGTACTGATGTTAGAAACCTTTTTATGCCTTCTAGTTCTGTGCTTCTAGAAAAGGCTTTTGGGGCTAGGGAAATTACCCTCTTAAACCCTGTTTGGATTCATTCTAAGGTTTCTGGTAAACCCTTTTATGCAATTTTGCATAGGATTGATGTTGGGATTGTTATTGATCTTGAGCCTGCTAGGACTGAGGACCCTGCTTTGTCTATTGCTGGGGCTGTTCAGTCTCAGAAACTTGCTGTTAGGGCTATTTCCCATTTACAGTCCTTACCTGGTGGGGATATTAAGCTCTTGTGTGATACTGTGGTTGAGAGTGTGAGGGAGCTTACCGGTTATGACCGCGTTATGGTGTACAAGTTCCATGAGGATGAGCATGGGGAGGTTGTGGCCGAGACTAAACGGCCTGATTTGGAGCCGTATATTGGCTTGCATTATCCTGCTACTGATATTCCTCAGGCTTCGAGGTTTTTGTTCAAGCAGAATCGTGTTAGGATGATCGTTGATTGTCATGCCAAACCTGTTCCTGTGGTTCAGGATCAGCGGCTTCAGCAGCCTCTTTGCTTGGTTGGTTCGACCCTTAGGGCTCCTCATGGTTGTCATTCTCAGTATATGGCTAATATGGGCTCAATTGCGTCGTTAGTTATGGCTGTGATCATCAATGGGAATGATGATGAGGCTACGAGTGGTAGGAACTCGATGAGATTGTGGGGTTTGGTCGTATGCCATCATACTTCTCCTCGGTCTATCCCTTTTCCGTTGAGATATGCTTGCGAGTTCTTGATGCAGGCATTTGGGCTCCAGTTGAACATGGAGTTGCAGCTTGCATCACAGATGTTGGAGAAACGTGTACTGAGGACTCAAACCCTTTTATGTGATATGCTTCTCCGAGACTCTCCAACTGGGATTGTCACTCAAAGCCCTAGTATCATGGATCTTGTGAAGTGTGATGGGGCAGCACTCTTCTGTCATGGGAAGTACTATCCATTAGGTGTGAGCCCGACTGAGACCCAAATAAAAGATATTGTGCAGTGGTTGTTGACTCACCATGGCGATTCAACTGGCCTGAGCGCCGATAGTTTGGCTGATGCTGGGTACCCTGGGGCTGCAGCGCTGGCTGATGCTGTTTGTGGGATGGCTGTTGCTTACATCACTCAACAAGATTTCCTTTTCTGGTTTCGATCACACACGGCAAAAGAAATCAAGTGGGGTGGTGCAAAGCATCATCCCGAGGATAAGGATGATGTGCAAAGGATGCATCCACGTTCGTCATTTAAAGCCTTTCTGGAAGTCGTCAAAAGTCGGAGTTTACCATGGGAGAATGCGGAGATGGATGCAATTCATTCTTTGCAGCTTATATTGCGAGACTCATTTAGGGATGCTGAGGCTAACAATTCCAGGGCAGTTGTACAAGCTCAAGCCATGGAGTTAGAGCTACAAGAGATGGATGAGCTTAGTTCGGTTGCAAGAGAAATGGTTAGGTTGATCGAAACTGCCACTGCACCAATATTTGCTGTTGGTGCTGATGGCTGCATAAATGGGTGGAACGCGAAGGTTGCAGAGTTGACAGGGCTCTCTGTGGAGGAAGCCATGGGAAAATCCTTGGTTCATGACCTTATTTATAAGGAGTTTGAAGAAGCTGTTCAGGAGCTTCTGGATCACGCTTTAAGAGGCCAAGAAGACAAGAATGTAGAGATAAAGTTGAGGACATTTGGTTCAGAGCCTTATGACAAAGCTGTTTACATTGTTGTCAATGCTTGCTCCAGCAAAGACCACACTAACAAAATTGTGGGAGTATGTTTTGTTGGCCAGGATGTTACAGCTCAGAAAGTTGTCATGGATAAATTCATCAATATACAGGGTGATTACAAGGCTATTGTTCACAGTCCGAATCCTTTGATCCCGCCTATATTTGCTGCAGATGTGAACACATGTTGCACTGAGTGGAACACCGCCATGGAAAAGCTCACTGGCTGGAGCAGAGGAGAAGTTATGGGAAAGATGTTGGTTGGTGAGATCTTTGGTGCTTGCTGCCGACTTAAGGGTCAAGATGCGTTGACCAAATTCATGATTGTTTTGCATGGTACAATTGGAGGGCAAGACAGTGATAAATTTCCATTTTCCTTCTATGACCGCAATGGGAAATTTGTGCAAGCTCTCTTGACTGCAAATAAGAGAGTTGATGTGAGTGAGCAAATTACTGGAGCCTTCTGCTTTTTGCAGATAGCAAGTCCTGAGGTGCAGCATGCTTTGAAAGTTCAGAGACAAGAAGAAAGAAAATGCTTCGAGAGGATGAAAGACTTGGCTTACCTATGTCAAGAAATAAAAAATCCGCTAAATGGTATACATTTCACTAATTCTCTTTTGGAAGCTACTGATTTGACTGAAGATCAGAAGCAGTTTATCGAGACAAGCCATGCTTGTGAGAAACAAATTCACAAGCTTATAGGAGATGTGCATTTGGAAAGCATTGACAATGCTTCTTTGGAGCTGGAGAAGGCTGAATTTATGTTGGGAAGTGTCATAAATGCTGTTGTCAGCCAAGTGATGATATTGCTTCGCGAAAGAGGCTTACAGTTGATCAGGGATATTCCAGAAGAAATAAAAAGCTTGGCTGTTTGTGGGGATCAAGTCAGAATTCAGCAGATCTTGGCAGAGTTCTTGGTAAATATGGTTCGTTATGCACCATCCCCTGATGGCTGGGTGGAGATTCATGTTCGACCAAGACTAAAACAGATTTGTGATGGGCTGAATGTTGTTTATATTGAATTCAGGCTGGTATGCCCCGGTGAAGGGCTTCCCCCGGATTTAGTTCAAGACATGTTCCACAACAGTCGATGGGTGACTCAGGAAGGCCTTGGATTGAGCATGTGCAGGAAGATTCTTCGGCTTATGAACGGTGAAGTTCAATACATCCGAGAGTCGGAAAGAAGTTACTTCCTCATCATACTCGAGCTTCCTATTCCGCGCAGAGGCTTAAAGGGTGTCGACTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_63645.p1 GENE.S_Transcript_63645~~S_Transcript_63645.p1 ORF type:complete len:1130 (+),score=280.14,PHY|PF00360.16|4.8e-59,PAS|PF00989.20|6.7e+02,PAS|PF00989.20|4.5e-22,PAS|PF00989.20|1.6e-23,PAS_2|PF08446.7|3e-42,GAF|PF01590.22|2.2e-34,PAS_9|PF13426.2|1.6,PAS_9|PF13426.2|2.5e-05,PAS_9|PF13426.2|0.12,HATPase_c|PF02518.22|36,HATPase_c|PF02518.22|3.4e-10,PAS_4|PF08448.6|4.8e+03,PAS_4|PF08448.6|3.4e-07,PAS_4|PF08448.6|12,HisKA|PF00512.21|1.5e+04,HisKA|PF00512.21|5e-09,HisKA|PF00512.21|1.8e+03,PAS_8|PF13188.2|6.6,PAS_8|PF13188.2|1.4,PAS_8|PF13188.2|1 S_Transcript_63645:344-3733(+)
MASGTKASNASTSNNNARMSKNNINPSDSISKQIAQYTEDARLHAVFEQSGESGKSFDYSQSVRTTTQSVPELQITAYLSKIQRGGNIQPFGCMIAIDETSFRVIAFSQNALEMLGYNPQSVPNFEERLELLTIGTDVRNLFMPSSSVLLEKAFGAREITLLNPVWIHSKVSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISHLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAETKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCHAKPVPVVQDQRLQQPLCLVGSTLRAPHGCHSQYMANMGSIASLVMAVIINGNDDEATSGRNSMRLWGLVVCHHTSPRSIPFPLRYACEFLMQAFGLQLNMELQLASQMLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCDGAALFCHGKYYPLGVSPTETQIKDIVQWLLTHHGDSTGLSADSLADAGYPGAAALADAVCGMAVAYITQQDFLFWFRSHTAKEIKWGGAKHHPEDKDDVQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEANNSRAVVQAQAMELELQEMDELSSVAREMVRLIETATAPIFAVGADGCINGWNAKVAELTGLSVEEAMGKSLVHDLIYKEFEEAVQELLDHALRGQEDKNVEIKLRTFGSEPYDKAVYIVVNACSSKDHTNKIVGVCFVGQDVTAQKVVMDKFINIQGDYKAIVHSPNPLIPPIFAADVNTCCTEWNTAMEKLTGWSRGEVMGKMLVGEIFGACCRLKGQDALTKFMIVLHGTIGGQDSDKFPFSFYDRNGKFVQALLTANKRVDVSEQITGAFCFLQIASPEVQHALKVQRQEERKCFERMKDLAYLCQEIKNPLNGIHFTNSLLEATDLTEDQKQFIETSHACEKQIHKLIGDVHLESIDNASLELEKAEFMLGSVINAVVSQVMILLRERGLQLIRDIPEEIKSLAVCGDQVRIQQILAEFLVNMVRYAPSPDGWVEIHVRPRLKQICDGLNVVYIEFRLVCPGEGLPPDLVQDMFHNSRWVTQEGLGLSMCRKILRLMNGEVQYIRESERSYFLIILELPIPRRGLKGVD*

Click here to download the sequence:
Link to NCBI Protein BLAST