Transcript Information: S_Transcript_63816.p1


Annotated TAIR IDAT5G50920.1
Annotated Gene NameCLPC Homologue 1
Annotated Gene Symbol(s)CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1
Annotation TypeOrtholog
Chromosome Positionchr5:20715710-20719800 | Reverse length=929
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 1267.22448642858
Replicate 2320.93718013264
Replicate 3355.44182270212
Condition 2: 8 Hour
Replicate 1525.81857964853
Replicate 2517.84534492042
Replicate 3507.05879908819
Condition 3: 24 Hour
Replicate 1349.6363440935
Replicate 2328.94413100692
Replicate 3305.4487845165


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_63816.p1 GENE.S_Transcript_63816~~S_Transcript_63816.p1 ORF type:complete len:924 (+),score=245.32,AAA_2|PF07724.10|2.3,AAA_2|PF07724.10|4.2e+03,AAA_2|PF07724.10|3.7e-55,Clp_N|PF02861.16|2.5e-17,Clp_N|PF02861.16|1.3e-18,AAA|PF00004.25|7.4e+03,AAA|PF00004.25|1.6e-14,AAA|PF00004.25|4.4e+03,AAA|PF00004.25|1.5e-07,ClpB_D2-small|PF10431.5|2e-24,AAA_5|PF07728.10|8e-05,AAA_5|PF07728.10|6.3e+02,AAA_5|PF07728.10|8.6e-12,AAA_16|PF13191.2|1.2e-05,AAA_16|PF13191.2|1e+04,AAA_16|PF13191.2|0.045,AAA_16|PF13191.2|3.2e+03,Sigma54_activat|PF00158.22|0.22,Sigma54_activat|PF00158.22|1.1e-05,AAA_17|PF13207.2|9.3e+03,AAA_17|PF13207.2|0.63,AAA_17|PF13207.2|1e-05,IstB_IS21|PF01695.13|0.025,IstB_IS21|PF01695.13|0.22,UVR|PF02151.15|1.3e-06,AAA_18|PF13238.2|0.016,AAA_18|PF13238.2|1.5e+03,AAA_18|PF13238.2|0.24,AAA_18|PF13238.2|8.7e+03,AAA_25|PF13481.2|3.7e+03,AAA_25|PF13481.2|0.0094,AAA_25|PF13481.2|4.1,AAA_14|PF13173.2|0.13,AAA_14|PF13173.2|0.45 S_Transcript_63816:409-3180(+)
ATGACGGGGGCATTGGTTCAGTCAACAAACGTTCCTGCTACATTTGCCTATCAGAGAAATGGCCAAATCCAAAGATCTGGAAAGGGTAAAAGGTCTGTGAAAATGATGGCTAGCCTTCAAGCACCAGGGCGTAGAATACAAACTTTCTCAGGGTTGCGTGGAGGTAATGCTTTGGATACTTTGGGATCTTCTAACGAATGTTTCTATTCGAAGATGAGAGCTGTGCTATCTGTACGTAGAGGAACAGCAAGCCGTGGTGTTGTAAGAGCTATGTTTGAACGTTTCACTGAGAAAGCTATTAAAGTTATAATGCTTGCTCAAGAGGAGGCCAGACGATTAGGTCATAATTTTGTTGGGACAGAACAAATTCTGTTGGGTCTTATTGGTGAGGGCACTGGAATTGCTGCTAAGGTGCTGAAATCCATGGGCATCAACCTGAAAGATGCCCGTGTAGAAGTTGAAAAAATTATCGGCAGAGGCAGCGGATTTGTTGCTGTTGAAATTCCGTTCACCCCTCGTGCTAAACGTGTTTTGGAACTTTCATTAGAGGAGGCTCGTCAACTTGGCCACAACTATATTGGATCGGAACACTTGCTTCTGGGTCTTCTTCGTGAGGGTGAGGGTGTGGCTGCTCGTGTTCTAGAGAATTTGGGTGCTGATCCAAGCAACATTCGAACACAGGTCATTCGTATGGTGGGCGAGAACACTGAAGCTGTTGGTGCTGGTGTTGGTGGGGGCAGTACTGGCAATAAGATGCCAACATTGGAGGAGTATGGAACAAATTTGACAAAGTTGGCAGAAGAGGGAAAATTGGATCCTGTTGTTGGAAGGCAGCAGCAGATAGAGCGTGTTACTCAAATTTTGGGCAGGCGAACCAAGAATAACCCATGTCTTATTGGAGAGCCAGGTGTTGGTAAAACAGCAATTGCCGAGGGCCTTGCACAAAGAATAGCTAATGGTGATGTCCCAGAAACAATTGAGGGGAAGAAGGTTATAACTCTCGATATGGGTCTATTGGTCGCTGGAACAAAATATCGTGGAGAGTTTGAGGAAAGATTGAAGAAGTTGATGGAGGAAATTAAACAGAGTGATGAAATTATTCTCTTTATTGATGAGGTACATACTTTGATTGGAGCTGGAGCAGCAGAGGGAGCCATTGATGCTGCAAACATCTTGAAACCAGCACTTGCAAGGGGTGAGCTTCAGTGCATTGGAGCCACCACACTGGATGAATACAGAAAACATATTGAAAAGGATCCAGCTTTGGAGAGAAGGTTTCAGCCTGTGAAAGTGCCTGAACCAACTGTAGATGAAACTATACAGATTTTGAAAGGGCTTCGTGAGCGGTATGAGATTCACCATAAACTTCGTTACACTGATGAAGCCCTAGTGTCTGCAGCCCAACTTTCTTACCAGTACATCAGTGATCGTTTCCTCCCTGATAAAGCTATTGACCTTATTGATGAGGCTGGTTCTCGTGTTCGATTGCGCCATGCTCAGCTTCCTGAAGAAGCTAGGGAGCTTGAGAAAGAACTTAGGCAGATCACAAAGGAGAAGAATGAATCTGTCCGTGGCCAAGACTTTGAAAAGGCTGGTGAGTTGCGTGACCGAGAAATGGATCTTAAGGCCCAAATTACTGCCCTCATAGAGAAGAACAAGGAAATGAGCAAGGCAGAGACAGAAGCTGGGGATGTTGGTCCTATAGTTACAGAAGTGGATATTCAGCACATTGTCTCTTCATGGACTGGTATTCCTGTCGAGAAGGTGTCCACAGATGAGTCTGACCGTCTCCTCAAAATGGAGGAAACTCTCCACAAGAGAGTTATTGGTCAAGACGAAGCTGTGAAAGCCATTAGCCGTGCCATCCGCCGTGCTCGTGTGGGCCTGAAGAACCCCAACCGTCCAATCGCAAGCTTCATCTTCTCTGGTCCAACTGGAGTTGGGAAGTCTGAACTTGCAAAAGCTTTGGCTGCTTATTACTTTGGATCTGAAGAAGCCATGATCCGGCTTGATATGAGTGAATTTATGGAGAGGCACACCGTCTCCAAACTAATTGGTTCCCCACCAGGTTACGTGGGTTACACAGAGGGTGGCCAGCTTACTGAGGCCGTCAGGCGTCGCCCTTACACAGTGGTGCTCTTTGACGAAATCGAGAAGGCTCATCCCGATGTCTTCAACATGATGCTTCAAATTCTTGAAGACGGGAGGTTGACCGACAGCAAAGGTAGAACCGTAGATTTCAAGAACACACTTCTAATTATGACTTCAAATGTCGGAAGCAGTGTAATCGAGAAAGGTGGCCGTAGAATAGGATTTGACTTAGATTATGATGAGAAGGACAGCAGTTACAACAGAATTAAGAGCCTGGTGACCGAGGAGTTGAAGCAATATTTCAGGCCAGAGTTCTTGAACAGACTGGATGAGATGATTGTGTTCAGGCAGCTCACAAAGCTCGAGGTCAAAGAAATTGCCGATATTATGTTGAAGGAAGTCTTCGAGAGGCTCAAGACCAAGGACATCGAGCTTCAAGTAACTGAGAGGTTCAGAGACCGAGTGGTGGAGGAAGGATACAACCCGAGCTATGGTGCTAGGCCTCTTAGAAGAGCTATAATGAGACTTCTTGAGGACAGCATGGCTGAGAAGATGCTTGCTAGAGAAATCAAAGAAGGTGACTCCGTGATCGTGGATGTCGATTCCGATGGAAACGTTATCGTTCTCAATGGTAGCAGCGGTGCCCCGCCCGAGTCCTTGCCAGAGCCCATCACTGTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_63816.p1 GENE.S_Transcript_63816~~S_Transcript_63816.p1 ORF type:complete len:924 (+),score=245.32,AAA_2|PF07724.10|2.3,AAA_2|PF07724.10|4.2e+03,AAA_2|PF07724.10|3.7e-55,Clp_N|PF02861.16|2.5e-17,Clp_N|PF02861.16|1.3e-18,AAA|PF00004.25|7.4e+03,AAA|PF00004.25|1.6e-14,AAA|PF00004.25|4.4e+03,AAA|PF00004.25|1.5e-07,ClpB_D2-small|PF10431.5|2e-24,AAA_5|PF07728.10|8e-05,AAA_5|PF07728.10|6.3e+02,AAA_5|PF07728.10|8.6e-12,AAA_16|PF13191.2|1.2e-05,AAA_16|PF13191.2|1e+04,AAA_16|PF13191.2|0.045,AAA_16|PF13191.2|3.2e+03,Sigma54_activat|PF00158.22|0.22,Sigma54_activat|PF00158.22|1.1e-05,AAA_17|PF13207.2|9.3e+03,AAA_17|PF13207.2|0.63,AAA_17|PF13207.2|1e-05,IstB_IS21|PF01695.13|0.025,IstB_IS21|PF01695.13|0.22,UVR|PF02151.15|1.3e-06,AAA_18|PF13238.2|0.016,AAA_18|PF13238.2|1.5e+03,AAA_18|PF13238.2|0.24,AAA_18|PF13238.2|8.7e+03,AAA_25|PF13481.2|3.7e+03,AAA_25|PF13481.2|0.0094,AAA_25|PF13481.2|4.1,AAA_14|PF13173.2|0.13,AAA_14|PF13173.2|0.45 S_Transcript_63816:409-3180(+)
MTGALVQSTNVPATFAYQRNGQIQRSGKGKRSVKMMASLQAPGRRIQTFSGLRGGNALDTLGSSNECFYSKMRAVLSVRRGTASRGVVRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGENTEAVGAGVGGGSTGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNESVRGQDFEKAGELRDREMDLKAQITALIEKNKEMSKAETEAGDVGPIVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKTKDIELQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVIVLNGSSGAPPESLPEPITV*

Click here to download the sequence:
Link to NCBI Protein BLAST