Transcript Information: S_Transcript_64652.p1


Annotated TAIR IDAT5G40190.1
Annotated Gene NameRNA ligase/cyclic nucleotide phosphodiesterase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16069298-16069849 | Reverse length=183
E-Value1.4E-100
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 145.026321008711
Replicate 238.162663018404
Replicate 343.06628101684
Condition 2: 8 Hour
Replicate 137.809340670376
Replicate 238.818180612715
Replicate 337.446759306048
Condition 3: 24 Hour
Replicate 131.645560948536
Replicate 239.079761582999
Replicate 339.264588046883


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_64652.p1 GENE.S_Transcript_64652~~S_Transcript_64652.p1 ORF type:complete len:185 (+),score=26.14,2_5_RNA_ligase2|PF13563.2|5.8e-09 S_Transcript_64652:299-853(+)
ATGTCACAAGGCTATGCAATTGAACTTTACTTCGATCCAGCCCTAGAAAACCAAGTCCTGAAAGCATGGAATGTTCTAGCTCGTCGCCAAATCAGTACCCAACTTATAGAAATTGAGTCTCGTCCCCACATAACCCTCTTTTCAACCCCATCTTTCATTGACCCTTCAAAGCTTGAACCTTTGATCAAATCATTTGCTCAAAAACAAGACCCTTTACTTCTCAATTTCTCCTCAATTGGGTCCTTTCCTAATGACAGTAATACCCTTTTCTTATCTCCAACCCCCACATTGTCTTTGCTCCAGTTTCAGACCCAACTTTGTGATCTCCTCAAGAAGGAAGCCACCATTGAAATTGGGGATGAATTCCGGGTCGATTCGTGGGTCCCCGTTTGCCCGGTTGCTCAGGATGTCCCTAAGAATAGGATGGCTGAAGCTTTCAGTGTTTTGAGGGACCTCAAGTTGCCTGTTCATGGCTATGCCATGGATATTGGCTTGGTCGAGTTTTCGCCAGTCCGAGAGTTGTTCTCCTTCATGCTTGGTAACACGGTAGAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_64652.p1 GENE.S_Transcript_64652~~S_Transcript_64652.p1 ORF type:complete len:185 (+),score=26.14,2_5_RNA_ligase2|PF13563.2|5.8e-09 S_Transcript_64652:299-853(+)
MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSTPSFIDPSKLEPLIKSFAQKQDPLLLNFSSIGSFPNDSNTLFLSPTPTLSLLQFQTQLCDLLKKEATIEIGDEFRVDSWVPVCPVAQDVPKNRMAEAFSVLRDLKLPVHGYAMDIGLVEFSPVRELFSFMLGNTVE*

Click here to download the sequence:
Link to NCBI Protein BLAST