Transcript Information: S_Transcript_64685.p1


Annotated TAIR IDAT1G02870.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:637401-638603 | Reverse length=193
E-Value2.4E-92
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.830019446369
Replicate 224.401241906929
Replicate 321.502360503
Condition 2: 8 Hour
Replicate 137.442275165104
Replicate 234.124801381334
Replicate 330.549440576724
Condition 3: 24 Hour
Replicate 118.623518183225
Replicate 216.919527536259
Replicate 320.572819629979


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_64685.p1 GENE.S_Transcript_64685~~S_Transcript_64685.p1 ORF type:5prime_partial len:217 (+),score=47.81,Nop16|PF09420.6|1.2e-05,Nop16|PF09420.6|7.5e-16 S_Transcript_64685:3-653(+)
GGGGGCTCTCGCATTCCTTTCCCAGTTCCCACCCTTCTACACAACAGACCAAACCCTCATAGAAACCACAGAGAGATGGGCAGGTCAAGAAGAAAGTACAAGAGATCAAGAACAAAAGTTCAAGTGGGTCTCCTAAAGAAGAACCCAAGAGTATTCAAACCAGCCTTCAATCTCCCACCAAAGCTCAGAACCCTACTTGACCCCTTAGGCGCAAAATGGGATGAAAAGGGCAGTGTTATCAGCAACTACAAGCAATTTGGTGTTGTTTCTAATCCCAATTTGCTTGGTATTCGTTCAAGAACTTCTCATATGATTGAGAGCGACTCTCTTAATGTTCCCCCTCCTCGTTCTGATGAGCCTCTTGATGAGTTTGAGCCCATTGATTCTGGCAGTGATCTTGAAGAAGATGATCTGAAAACAGCACTTGGGAAGAAGCGAAGGGATGGTAAAAGTGCCCCATTACAGCCATTGGCTTCAATGCAACGTGAGCATATTCGTCCTTTAATTGAGAAGTACGGAAATGACTATGAGAGAATGTTTATGGATATAAAGCTAAACAGCATGCAGCATTCTGTTGCCACATTGAAGAATTTGTGTAAAAGATACCATCAATGGAAAGATAAGAATCCCTTGATATTAGGCGTCAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_64685.p1 GENE.S_Transcript_64685~~S_Transcript_64685.p1 ORF type:5prime_partial len:217 (+),score=47.81,Nop16|PF09420.6|1.2e-05,Nop16|PF09420.6|7.5e-16 S_Transcript_64685:3-653(+)
GGSRIPFPVPTLLHNRPNPHRNHREMGRSRRKYKRSRTKVQVGLLKKNPRVFKPAFNLPPKLRTLLDPLGAKWDEKGSVISNYKQFGVVSNPNLLGIRSRTSHMIESDSLNVPPPRSDEPLDEFEPIDSGSDLEEDDLKTALGKKRRDGKSAPLQPLASMQREHIRPLIEKYGNDYERMFMDIKLNSMQHSVATLKNLCKRYHQWKDKNPLILGVK*

Click here to download the sequence:
Link to NCBI Protein BLAST