Transcript Information: S_Transcript_64688.p1


Annotated TAIR IDAT1G02870.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosome biogenesis protein Nop16 (InterPro:IPR019002); Has 104 Blast hits to 104 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 63; Plants - 35; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:637401-638603 | Reverse length=193
E-Value6.1E-92
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.459258127363
Replicate 23.950106427328
Replicate 34.2684061678202
Condition 2: 8 Hour
Replicate 12.8868432307036
Replicate 28.0108802989414
Replicate 36.6088435805837
Condition 3: 24 Hour
Replicate 15.4373727465671
Replicate 26.0370851797257
Replicate 31.8723788423012


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_64688.p1 GENE.S_Transcript_64688~~S_Transcript_64688.p1 ORF type:5prime_partial len:229 (+),score=44.10,Nop16|PF09420.6|2.4e-21 S_Transcript_64688:1-687(+)
CACACCAATCCGCCATATGTAGCCCTAAAACCCTCTCTTATAACCCTTCTCCCGCATTCCTTTCCCAGCGTTCTCCACAACAGACCAAACCATCATAGAAACCACAGAGAGATGGGCAGGTCAAGAAGAAAGTACAAGAGATCAAGAACAAAAGTTCAAGTGGGTCTCCTAAAGAAGAACCCAAGAGTATTCAAACCAGCCTTCAATCTCCCACCAAAGCTCAGAACCCTACTTGACCCCTTAGGCGCAAAATGGGATGAAAAGGGCAGTGTTATCAGCAACTACAAGCAATTTGGTGTTGTTTCTAATCCCAATTTGCTTGGTATTCGTTCAAGAACTTCTCATATGATTGAGAGCGACTCTCTTAATGTTCCCCCTCCTCGTTCTGATGAGCCTCTTGATGAGTTTGAGCCCATTGATTCTGGCAGTGATCTTGAAGAAGATGATCTGAAAACAGCACTTGGGAAGAAGCGAAGGGATGGTAAAAGTGCCCCATTACAGCCATTGGCTTCAATGCAACGTGAGCATATTCGTCCTTTAATTGAGAAGTACGGAAATGACTATGAGAGAATGTTTATGGATATAAAGCTAAACAGCATGCAGCATTCTGTTGCCACATTGAAGAATTTGTGTAAAAGATACCATCAATGGAAAGATAAGAATCCCTTGATATTAGGCGTCAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_64688.p1 GENE.S_Transcript_64688~~S_Transcript_64688.p1 ORF type:5prime_partial len:229 (+),score=44.10,Nop16|PF09420.6|2.4e-21 S_Transcript_64688:1-687(+)
HTNPPYVALKPSLITLLPHSFPSVLHNRPNHHRNHREMGRSRRKYKRSRTKVQVGLLKKNPRVFKPAFNLPPKLRTLLDPLGAKWDEKGSVISNYKQFGVVSNPNLLGIRSRTSHMIESDSLNVPPPRSDEPLDEFEPIDSGSDLEEDDLKTALGKKRRDGKSAPLQPLASMQREHIRPLIEKYGNDYERMFMDIKLNSMQHSVATLKNLCKRYHQWKDKNPLILGVK*

Click here to download the sequence:
Link to NCBI Protein BLAST