Transcript Information: S_Transcript_64975.p1


Annotated TAIR IDAT1G28120.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323), Ubiquitin thioesterase Otubain (InterPro:IPR016615), Peptidase C65, otubain (InterPro:IPR019400); Has 413 Blast hits to 411 proteins in 139 species: Archae - 0; Bacteria - 0; Metazoa - 184; Fungi - 83; Plants - 88; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:9813219-9815143 | Reverse length=306
E-Value3E-99
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.815730838856
Replicate 213.732026695549
Replicate 312.397191890221
Condition 2: 8 Hour
Replicate 115.57372902828
Replicate 216.430776801791
Replicate 316.893472583201
Condition 3: 24 Hour
Replicate 111.239691090596
Replicate 211.096804008336
Replicate 312.140071165948


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_64975.p1 GENE.S_Transcript_64975~~S_Transcript_64975.p1 ORF type:complete len:241 (+),score=48.01,Peptidase_C65|PF10275.5|1.1e-52 S_Transcript_64975:357-1079(+)
ATGGAGAATCAGGAGAATTTGAAATTGAATCTGGAAGAATCCAATTCCAAGCCTGCTGGCGTAATCGACGACGACTGGAAGAAGTTTAGGGACGATGATATCATGCATCAACATTCAGCTATTCGAGCCGAACAGGCCCACAAAATCCGTTTTGTTGGCGACAAGGAACCTCTTTCTGTGCTGGCTGCAGAATACCATTTAGGAAGTCCTATTTTGGTTGAAAAGATAAAGCTTCTTGATGATCAGTACTCTGCAATTAGGCGAACACGAGGAGATGGAAATTGCTTTTTCCGGAGTTTTATGTTCTCATATTTGGAGCACATTCTTGAAACACAAGATAAAGCTGAGGTTGATCGTGTCAAGGCCAATGTTGAAGAATGTCAGAAGACACTTCAGACTCTTGGTTATGCAGACTTCACATTTGAAGATTTTTTCGCGTTATTTCTTGAGCAGCTGGAAAGTGTCGTTCAAGGGACAGATTCTTCAATAAGTCATGATGAGCTTGTGGAGAGGAGTCGGGATCAATCAATATCTGACTATGTTGTAATGTTCTTTAGATTTGTCACGTCTGGGGAGATACGAAAACGTTCAGAGTTCTTTGAGCCTTTCATATTAGGATTGACAAATGCCACTGTGGATCAGGTGTGTTTGGATTCTGAAGGTTGGATTATTACATTAGCAAGATTTCTTGCTTTTCTTCTGTATTTGTTACACAGATCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_64975.p1 GENE.S_Transcript_64975~~S_Transcript_64975.p1 ORF type:complete len:241 (+),score=48.01,Peptidase_C65|PF10275.5|1.1e-52 S_Transcript_64975:357-1079(+)
MENQENLKLNLEESNSKPAGVIDDDWKKFRDDDIMHQHSAIRAEQAHKIRFVGDKEPLSVLAAEYHLGSPILVEKIKLLDDQYSAIRRTRGDGNCFFRSFMFSYLEHILETQDKAEVDRVKANVEECQKTLQTLGYADFTFEDFFALFLEQLESVVQGTDSSISHDELVERSRDQSISDYVVMFFRFVTSGEIRKRSEFFEPFILGLTNATVDQVCLDSEGWIITLARFLAFLLYLLHRS*

Click here to download the sequence:
Link to NCBI Protein BLAST