Transcript Information: S_Transcript_65242.p1


Annotated TAIR IDAT5G53060.1
Annotated Gene NameRNA-binding KH domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21515355-21518197 | Forward length=652
E-Value1.1E-255
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.461489890044
Replicate 217.429927726788
Replicate 318.876045595109
Condition 2: 8 Hour
Replicate 127.744927784111
Replicate 227.890895000188
Replicate 324.477228820992
Condition 3: 24 Hour
Replicate 120.112690086054
Replicate 219.369072448508
Replicate 317.407284684882


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_65242.p1 GENE.S_Transcript_65242~~S_Transcript_65242.p1 ORF type:complete len:681 (+),score=176.13,KH_1|PF00013.25|6.9e-10,KH_1|PF00013.25|1.3e-09,KH_1|PF00013.25|0.0045,KH_1|PF00013.25|0.14,KH_1|PF00013.25|3.9e-07,KH_3|PF13014.2|1.2e-09,KH_3|PF13014.2|3.3e-07,KH_3|PF13014.2|2.4,KH_3|PF13014.2|0.18,KH_3|PF13014.2|4.4 S_Transcript_65242:613-2655(+)
ATGGACAGATCAAGATCTAAGAGGAGCTACTACTATGACCATCAAGACTATGACCCTGAACCCTTTTCCAGGACCAGACCCAGATACAACAACTCCGCCCCTAGCCAACATCATTACCCTAGCAACCGCCACCGTGGTGGTGGTGGTGGATTTGGCGGTGGCGGTGGAGGGAGGATGGGTGGTGGTGGTGGCGGTGGTAAAGGTTCTGACTCATCAATGGTCACTACAAGTTACAGGATCCTTTGCCATGATATGAAGGCAGGTGGTGTTATTGGGAAATCAGGGAGTATAATTAAGGCCATTAGGCAGCATACTGGAGCTTGGATCAATGTTCATGAGCTTATGCCTGGCGACGAGGAAAGGATTATTGAGATTTCTGATACCAGGAGGAGAGACCCAGATGGGAGAATGCCAGCATTTTCACCTGCTCAAGAAGCACTGTTCTTGATTCATGAGAGGATACTAGAGAGTGAGGGTTATGGAGATGAAGAAGGTGATTATGGTGGTCCTGGAAGAGGTGGTGGTGGTAATAACAATGGTAGGGTGGTGACAAGGTTGGTTGTGTCAAGAATGCATGTGGGAAGTTTGTTGGGTAAAGGAGGGAAGATTATTGAGCAAATGAGGATTGAGACCAAGACTCAGATTAGGATTCTCCCTCGCGACCATACCTTGCCTCGTTGTGTTTCCATGGGAGAGGAGATTGTTCAGGTTGTTGGTGATGTAAATGCCGTAAAGAGTGCCATCTCTATTATTTCATCGCGCTTAAAAGAGAGCCAGCATCGTGATCGAAGTCATTTTCAGGGACGGTATCACTCGGATGATCGGTATGCTGATGACGACTTTATTCCTCACATGAACAATACATCTCGCAGATCATCTCTGGATGCCGCTCCCTATGGCTCGCGATTATCCAACTCATCCAATAACAGGAGCAATAACTATTCATCTCGCTCTGGCGGCTATGGATATGAGTCTGAAGCTGCTGCACGTGCTGAAAATGGTCAACCCTCATTTGAAGAGCTTGTTTTCCGGATACTTTGTCCCAGTGACAGGGTTGATAGTGTGGTAGGGGAGTCCAGTGGTATTATTGATCTGCTTCAAAATGAAATTGGTGTGGAAGTCAAAGTTTCTGATCCTGTTGATGGGTCAGATGAGCGTATACTTATTGTTTCATCCGATGAGGGGCCTGATGACGAGCTATTTCCAGCTCAGGAAGCTTTGCTGCATATTCAAACTCGTATTGTAGATTTAGTTCCAGACAAGGATAATATTGTGACTACAAGGCTGCTTGTTGCTTCCAGTGAGATTGGATGCTTAGATGAAGGGGATGGATCACTATCTCAGTTGAGGAAATTTACTGGCGCAGATATAGAAATCCTGCCCAGAGAGAAACTTCCAGCATTCATATCAAGCAGCGATGAGCTTGTCCAAATTGTAGGAGAGATAAAAGTAGCTCGTGAAGCGCTTGTTGAGGTGACCGCCAGAATAAGAAGCTACTTATATAGGGATAACTCGCCAAGGGATAACTTGCAGAGGGATATGCTGCCGCCATCTGACTCAATTACCGGTTCTATAGGAAATGGGCTGTCTGGACCAGAAGTTGCAAACAATCCAGCTCCAACTTATGAATCATTGGGCACTGAACCTCCTCCTGCACAATCTCAAAACATGCAGACAGCAGTAATGGGCCAACCTTCTAAGGATGCTGGATTGGCAAGCTGTGAGACATCAAAACAGAATGAAAGTGAGCGTCGTGAAGATACACCTACCAGCTTGAGCAGCACCAGGATCCAAGTACCATTGGTCACAAGAAGCACTCTTGAAGTTGTCATACCAGAATATGCAGTTGCAAGGCTTCTTGCAAAATCCAAAAACAAGCTTGTTCAGATTAGTGAGTTATCTGGGGCCAATGTTACTCTGGTAGAAGATGGACCTGAGGCAACAGAAAAGGTGATCAGGATATCCGGCAGTCCAGAACAGTCTGAGAGAGCCCAGAGCTTGCTTCAGGGCTTTTTCTTGAGCATTCAAGAAGATGGTCCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_65242.p1 GENE.S_Transcript_65242~~S_Transcript_65242.p1 ORF type:complete len:681 (+),score=176.13,KH_1|PF00013.25|6.9e-10,KH_1|PF00013.25|1.3e-09,KH_1|PF00013.25|0.0045,KH_1|PF00013.25|0.14,KH_1|PF00013.25|3.9e-07,KH_3|PF13014.2|1.2e-09,KH_3|PF13014.2|3.3e-07,KH_3|PF13014.2|2.4,KH_3|PF13014.2|0.18,KH_3|PF13014.2|4.4 S_Transcript_65242:613-2655(+)
MDRSRSKRSYYYDHQDYDPEPFSRTRPRYNNSAPSQHHYPSNRHRGGGGGFGGGGGGRMGGGGGGGKGSDSSMVTTSYRILCHDMKAGGVIGKSGSIIKAIRQHTGAWINVHELMPGDEERIIEISDTRRRDPDGRMPAFSPAQEALFLIHERILESEGYGDEEGDYGGPGRGGGGNNNGRVVTRLVVSRMHVGSLLGKGGKIIEQMRIETKTQIRILPRDHTLPRCVSMGEEIVQVVGDVNAVKSAISIISSRLKESQHRDRSHFQGRYHSDDRYADDDFIPHMNNTSRRSSLDAAPYGSRLSNSSNNRSNNYSSRSGGYGYESEAAARAENGQPSFEELVFRILCPSDRVDSVVGESSGIIDLLQNEIGVEVKVSDPVDGSDERILIVSSDEGPDDELFPAQEALLHIQTRIVDLVPDKDNIVTTRLLVASSEIGCLDEGDGSLSQLRKFTGADIEILPREKLPAFISSSDELVQIVGEIKVAREALVEVTARIRSYLYRDNSPRDNLQRDMLPPSDSITGSIGNGLSGPEVANNPAPTYESLGTEPPPAQSQNMQTAVMGQPSKDAGLASCETSKQNESERREDTPTSLSSTRIQVPLVTRSTLEVVIPEYAVARLLAKSKNKLVQISELSGANVTLVEDGPEATEKVIRISGSPEQSERAQSLLQGFFLSIQEDGP*

Click here to download the sequence:
Link to NCBI Protein BLAST